Chemical Components in the PDB

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  • 0MK (Stereoisomer)
  • ARA (Stereoisomer)
  • HSY (Stereoisomer)
  • LXC (Stereoisomer)
  • LDY (Stereoisomer)
  • RIP (Stereoisomer)
  • XYP (Stereoisomer)
  • XYS (Stereoisomer)

PDBeChem : Atoms of Molecule

 Molecule : ARB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 0.351 0.436 1.398
2 C2 C C2 R N N 0 -0.83 0.547 0.432
3 C3 C C3 S N N 0 -0.716 -0.555 -0.628
4 C4 C C4 S N N 0 0.669 -0.466 -1.276
5 C5 C C5 N N N 0 1.737 -0.501 -0.181
6 H1 H H1 N N N 0 0.263 1.202 2.169
7 H2 H H2 N N N 0 -0.814 1.523 -0.052
8 H3 H H3 N N N 0 -0.838 -1.53 -0.156
9 H4 H H4 N N N 0 0.811 -1.311 -1.951
10 H51 H 1H5 N N N 0 1.639 -1.423 0.391
11 H52 H 2H5 N N N 0 2.726 -0.463 -0.638
12 HO1 H HO1 N N N 0 1.098 -0.883 2.613
13 HO2 H HO2 N N N 0 -2.081 1.102 1.812
14 HO3 H HO3 N N N 0 -1.62 -1.086 -2.264
15 HO4 H HO4 N N N 0 1.662 0.77 -2.398
16 O1 O O1 N N Y 0 0.343 -0.855 2.01
17 O2 O O2 N N N 0 -2.054 0.393 1.154
18 O3 O O3 N N N 0 -1.728 -0.373 -1.62
19 O4 O O4 N N N 0 0.776 0.754 -2.01
20 O5 O O5 N N N 0 1.574 0.617 0.688