Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : AMU

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 -1.394 0.451 -1.565
2 C2 C C2 R N N 0 -0.851 -0.137 -0.26
3 C3 C C3 R N N 0 0.66 0.106 -0.194
4 C4 C C4 S N N 0 1.304 -0.434 -1.475
5 C5 C C5 R N N 0 0.598 0.179 -2.686
6 C6 C C6 N N N 0 1.255 -0.329 -3.971
7 C7 C C7 N N N 0 -2.647 -0.011 1.381
8 C8 C C8 N N N 0 -3.324 0.652 2.553
9 C9 C C9 R N N 0 1.409 0.416 1.952
10 C10 C C10 N N N 0 1.262 -0.218 3.31
11 C11 C C11 N N N 0 2.814 1.006 1.814
12 O1 O O1 N N Y 0 -2.808 0.252 -1.623
13 O3 O O3 N N N 0 1.205 -0.57 0.939
14 O4 O O4 N N N 0 2.689 -0.084 -1.499
15 O5 O O5 N N N 0 -0.779 -0.19 -2.681
16 O6 O O6 N N N 0 0.596 0.242 -5.102
17 O7 O O7 N N N 0 -3.126 -1.011 0.891
18 O10 O O10 N N N 0 1.009 -1.396 3.402
19 O11 O O11 N N N 0 1.412 0.523 4.418
20 N2 N N2 N N N 0 -1.509 0.507 0.878
21 H1 H H1 N N N 0 -1.176 1.519 -1.597
22 H2 H H2 N N N 0 -1.046 -1.209 -0.235
23 H3 H H3 N N N 0 0.855 1.175 -0.11
24 H4 H H4 N N N 0 1.202 -1.519 -1.505
25 H5 H H5 N N N 0 0.682 1.265 -2.642
26 H61 H H61 N N N 0 2.307 -0.043 -3.979
27 H62 H H62 N N N 0 1.174 -1.416 -4.014
28 H81 H H81 N N N 0 -4.222 0.093 2.817
29 H82 H H82 N N N 0 -2.643 0.668 3.404
30 H83 H H83 N N N 0 -3.596 1.673 2.285
31 H9 H H9 N N N 0 0.67 1.209 1.84
32 H111 H H111 N N N 0 3.554 0.216 1.941
33 H112 H H112 N N N 0 2.925 1.452 0.825
34 H113 H H113 N N N 0 2.964 1.77 2.576
35 HO1 H HO1 N N Y 0 -3.111 0.642 -2.454
36 HO4 H HO4 N N Y 0 3.054 -0.443 -2.319
37 HO6 H HO6 N N Y 0 1.04 -0.103 -5.888
38 HO11 H HO11 N N N 0 1.318 0.116 5.29
39 HN2 H HN2 N N N 0 -1.126 1.308 1.27