Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 86Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 65


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CBD C C1 N N N 0 7.041 0.846 0.359
2 CBE C C2 R N N 0 7.62 -0.007 1.515
3 CBH C C3 N N N 0 9.149 0.05 1.525
4 CBF C C4 N N N 0 7.119 -1.426 1.138
5 CBG C C5 N N N 0 5.728 -1.153 0.527
6 NBC N N1 N N N 0 5.717 0.251 0.076
7 CBB C C6 N N N 0 5.393 0.342 -1.354
8 CBA C C7 N N N 0 3.931 -0.05 -1.571
9 OAZ O O1 N N N 0 3.081 0.903 -0.93
10 CAW C C8 N Y N 0 1.741 0.699 -1.028
11 CAX C C9 N Y N 0 1.254 -0.398 -1.722
12 CAY C C10 N Y N 0 -0.109 -0.603 -1.82
13 CAV C C11 N Y N 0 0.858 1.586 -0.428
14 CAU C C12 N Y N 0 -0.504 1.377 -0.53
15 CAT C C13 N Y N 0 -0.987 0.285 -1.227
16 CAH C C14 S N N 0 -2.473 0.06 -1.336
17 OAG O O2 N N N 0 -3.125 1.312 -1.545
18 CAE C C15 N Y N 0 -3.208 2.161 -0.489
19 CAD C C16 N Y N 0 -3.166 3.53 -0.668
20 CAC C C17 N Y N 0 -3.273 4.373 0.43
21 OAL O O3 N N N 0 -3.231 5.72 0.253
22 CAB C C18 N Y N 0 -3.422 3.85 1.709
23 CAA C C19 N Y N 0 -3.457 2.484 1.9
24 CAF C C20 N Y N 0 -3.343 1.631 0.805
25 CAJ C C21 N N N 0 -3.373 0.166 0.963
26 CAK C C22 N N N 0 -3.843 -0.464 2.249
27 CAI C C23 N N N 0 -2.97 -0.594 -0.074
28 CAM C C24 N Y N 0 -3.015 -2.063 0.028
29 CAN C C25 N Y N 0 -1.83 -2.805 0.006
30 CAO C C26 N Y N 0 -1.878 -4.179 0.101
31 CAP C C27 N Y N 0 -3.101 -4.827 0.217
32 OAS O O4 N N N 0 -3.142 -6.182 0.31
33 CAQ C C28 N Y N 0 -4.28 -4.095 0.239
34 CAR C C29 N Y N 0 -4.243 -2.72 0.151
35 H1 H H1 N N N 0 6.931 1.885 0.672
36 H2 H H2 N N N 0 7.681 0.782 -0.52
37 H3 H H3 N N N 0 7.212 0.309 2.475
38 H4 H H4 N N N 0 9.529 -0.229 0.543
39 H5 H H5 N N N 0 9.473 1.062 1.767
40 H6 H H6 N N N 0 9.533 -0.643 2.274
41 H7 H H7 N N N 0 7.779 -1.885 0.403
42 H8 H H8 N N N 0 7.033 -2.052 2.026
43 H9 H H9 N N N 0 5.559 -1.816 -0.321
44 H10 H H10 N N N 0 4.955 -1.306 1.281
45 H12 H H12 N N N 0 5.55 1.365 -1.697
46 H13 H H13 N N N 0 6.038 -0.333 -1.916
47 H14 H H14 N N N 0 3.714 -0.069 -2.639
48 H15 H H15 N N N 0 3.753 -1.039 -1.147
49 H16 H H16 N N N 0 1.939 -1.092 -2.186
50 H17 H H17 N N N 0 -0.488 -1.458 -2.361
51 H18 H H18 N N N 0 1.235 2.439 0.117
52 H19 H H19 N N N 0 -1.192 2.067 -0.063
53 H20 H H20 N N N 0 -2.675 -0.596 -2.183
54 H21 H H21 N N N 0 -3.051 3.943 -1.659
55 H22 H H22 N N N 0 -2.341 6.095 0.298
56 H23 H H23 N N N 0 -3.51 4.514 2.556
57 H24 H H24 N N N 0 -3.573 2.078 2.894
58 H25 H H25 N N N 0 -4.124 0.317 2.955
59 H26 H H26 N N N 0 -4.706 -1.099 2.047
60 H27 H H27 N N N 0 -3.04 -1.066 2.673
61 H28 H H28 N N N 0 -0.879 -2.301 -0.085
62 H29 H H29 N N N 0 -0.963 -4.752 0.085
63 H30 H H30 N N N 0 -3.102 -6.516 1.217
64 H31 H H31 N N N 0 -5.229 -4.604 0.33
65 H32 H H32 N N N 0 -5.161 -2.151 0.173