Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 6C6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C65 C C65 N N N 0 -6.926 0.097 -0.888
2 C64 C C64 N N N 0 -8.313 0.736 -1.079
3 C63 C C63 N N N 0 -8.387 1.929 -0.105
4 C62 C C62 N N N 0 -6.906 2.306 0.148
5 C61 C C61 N N N 0 -6.205 0.925 0.195
6 N6 N N6 N N N 0 -4.781 1.061 -0.125
7 C6 C C6 N Y N 0 -3.875 0.124 0.339
8 N1 N N1 N Y N 0 -4.28 -0.909 1.072
9 C2 C C2 N Y N 0 -3.422 -1.808 1.519
10 N3 N N3 N Y N 0 -2.131 -1.738 1.27
11 C4 C C4 N Y N 0 -1.634 -0.741 0.546
12 C5 C C5 N Y N 0 -2.507 0.238 0.042
13 N7 N N7 N Y N 0 -1.754 1.122 -0.656
14 C8 C C8 N Y N 0 -0.506 0.754 -0.618
15 N9 N N9 N Y N 0 -0.379 -0.386 0.119
16 C1' C C1* R N N 0 0.866 -1.108 0.391
17 O4' O O4* N N N 0 1.997 -0.216 0.286
18 C2' C C2* R N N 0 1.11 -2.184 -0.69
19 O2' O O2* N N N 0 0.688 -3.467 -0.223
20 C3' C C3* S N N 0 2.64 -2.162 -0.903
21 O3' O O3* N N N 0 3.21 -3.43 -0.575
22 C4' C C4* R N N 0 3.139 -1.075 0.074
23 C5' C C5* N N N 0 4.291 -0.284 -0.552
24 O5' O O5* N N N 0 4.814 0.636 0.409
25 PA P PA N N N 0 6.037 1.633 0.091
26 OA2 O OA2 N N N 0 7.372 0.775 -0.179
27 OA3 O OA3 N N N 0 5.718 2.44 -1.107
28 OA1 O OA1 N N N 0 6.273 2.61 1.349
29 H1 H H1 N N N 0 -7.033 -0.936 -0.559
30 H2 H H2 N N N 0 -6.366 0.136 -1.822
31 H3 H H3 N N N 0 -8.425 1.085 -2.106
32 H4 H H4 N N N 0 -9.093 0.012 -0.844
33 H5 H H5 N N N 0 -8.92 2.763 -0.562
34 H6 H H6 N N N 0 -8.869 1.632 0.827
35 H7 H H7 N N N 0 -6.515 2.908 -0.672
36 H8 H H8 N N N 0 -6.796 2.828 1.098
37 H9 H H9 N N N 0 -6.334 0.465 1.175
38 H10 H H10 N N N 0 -4.474 1.808 -0.662
39 H11 H H11 N N N 0 -3.793 -2.631 2.111
40 H12 H H12 N N N 0 0.309 1.279 -1.093
41 H13 H H13 N N N 0 0.831 -1.563 1.381
42 H14 H H14 N N N 0 0.592 -1.923 -1.613
43 H15 H H15 N N N 0 0.873 -4.19 -0.838
44 H16 H H16 N N N 0 2.879 -1.89 -1.931
45 H17 H H17 N N N 0 2.885 -4.161 -1.119
46 H18 H H18 N N N 0 3.455 -1.526 1.015
47 H19 H H19 N N N 0 5.077 -0.972 -0.862
48 H20 H H20 N N N 0 3.925 0.265 -1.419
49 H21 H H21 N N N 0 7.642 0.221 0.566
50 H22 H H22 N N N 0 6.997 3.239 1.228