Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5C5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 55


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2 O O1 N N N 0 -5.548 0.858 -0.934
2 C C C1 N N N 0 -4.834 -0.025 -1.348
3 O O O2 N N N 0 -5.281 -1.29 -1.379
4 C1 C C2 R N N 0 -3.444 0.296 -1.834
5 N N N1 N N N 0 -3.356 1.726 -2.158
6 C2 C C3 N N N 0 -2.43 -0.043 -0.74
7 S S S1 N N N 0 -0.757 0.342 -1.326
8 C3 C C4 R N N 0 0.275 -0.013 0.123
9 C18 C C5 N Y N 0 1.696 0.166 -0.344
10 C24 C C6 N Y N 0 1.956 0.858 -1.512
11 C23 C C7 N Y N 0 3.259 1.023 -1.943
12 C21 C C8 N Y N 0 4.306 0.495 -1.202
13 O1 O O3 N N N 0 5.587 0.656 -1.624
14 C22 C C9 N N N 0 6.614 0.085 -0.811
15 C20 C C10 N Y N 0 4.042 -0.199 -0.03
16 C19 C C11 N Y N 0 2.738 -0.358 0.399
17 C17 C C12 N Y N 0 0.018 1.073 1.091
18 C16 C C13 N Y N 0 0.127 2.352 0.503
19 C15 C C14 N Y N 0 -0.152 3.496 1.207
20 C14 C C15 N Y N 0 -0.551 3.383 2.527
21 C13 C C16 N Y N 0 -0.616 2.139 3.098
22 C12 C C17 N Y N 0 -0.31 0.964 2.375
23 C11 C C18 N N N 0 -0.37 -0.231 3.303
24 C10 C C19 N N N 0 -1.04 -1.441 2.732
25 C9 C C20 N Y N 0 -0.369 -2.021 1.506
26 C4 C C21 N Y N 0 0.11 -1.455 0.404
27 C8 C C22 N Y N 0 -0.286 -3.428 1.634
28 C7 C C23 N Y N 0 0.215 -4.22 0.634
29 C6 C C24 N Y N 0 0.638 -3.63 -0.543
30 C5 C C25 N Y N 0 0.581 -2.263 -0.653
31 H1 H H1 N N N 0 -6.181 -1.446 -1.061
32 H2 H H2 N N N 0 -3.227 -0.292 -2.726
33 H3 H H3 N N N 0 -3.554 2.293 -1.346
34 H4 H H4 N N N 0 -2.454 1.954 -2.547
35 H6 H H6 N N N 0 -2.647 0.544 0.152
36 H7 H H7 N N N 0 -2.495 -1.105 -0.5
37 H8 H H8 N N N 0 1.141 1.27 -2.089
38 H9 H H9 N N N 0 3.461 1.564 -2.856
39 H10 H H10 N N N 0 6.576 0.525 0.186
40 H11 H H11 N N N 0 6.464 -0.992 -0.739
41 H12 H H12 N N N 0 7.587 0.286 -1.26
42 H13 H H13 N N N 0 4.855 -0.612 0.548
43 H14 H H14 N N N 0 2.532 -0.895 1.313
44 H15 H H15 N N N 0 0.439 2.431 -0.528
45 H16 H H16 N N N 0 -0.061 4.465 0.74
46 H17 H H17 N N N 0 -0.807 4.263 3.099
47 H18 H H18 N N N 0 -0.909 2.055 4.134
48 H19 H H19 N N N 0 0.649 -0.501 3.581
49 H20 H H20 N N N 0 -1.076 -2.211 3.502
50 H21 H H21 N N N 0 -0.627 -3.891 2.548
51 H22 H H22 N N N 0 0.278 -5.29 0.764
52 H23 H H23 N N N 0 1.008 -4.233 -1.359
53 H24 H H24 N N N 0 0.903 -1.794 -1.571
54 H5 H H5 N N N 0 -0.902 0.063 4.208
55 H25 H H25 N N N 0 -2.065 -1.175 2.47