Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 50T

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C2 N Y N 0 -7.105 -0.241 -0.999
2 C4 C C4 N Y N 0 -4.917 -0.463 -0.332
3 C5 C C5 N Y N 0 -5.219 -1.728 0.199
4 C6 C C6 N Y N 0 -6.539 -2.197 0.087
5 C8 C C8 N Y N 0 -3.112 -1.362 0.562
6 N1 N N1 N Y N 0 -7.436 -1.424 -0.515
7 O3B O O3B N N N 0 7.131 -1.398 0.198
8 O2' O O2' N N N 0 -4.098 2.835 0.38
9 O2B O O2B N N N 0 5.708 -1.622 -1.969
10 O3' O O3' N N N 0 -1.904 4.0 -0.391
11 C3' C C3' S N N 0 -1.645 2.848 0.414
12 C4' C C4' R N N 0 -0.698 1.879 -0.319
13 C5' C C5' N N N 0 0.579 1.679 0.5
14 O5' O O5' N N N 0 1.498 0.873 -0.24
15 PA P PA N N N 0 2.95 0.461 0.32
16 O1A O O1A N N N 0 3.698 1.681 0.697
17 O2A O O2A N N N 0 2.779 -0.484 1.612
18 O3A O O3A N N N 0 3.76 -0.333 -0.823
19 O1B O O1B N N N 0 4.718 -1.865 1.051
20 O4B O O4B N N N 0 5.911 0.89 -0.019
21 C2' C C2' R N N 0 -2.942 2.029 0.62
22 O4' O O4' N N N 0 -1.391 0.627 -0.457
23 N9 N N9 N Y N 0 -3.582 -0.26 -0.088
24 N7 N N7 N Y N 0 -4.074 -2.222 0.73
25 N6 N N6 N N N 0 -6.896 -3.435 0.591
26 N3 N N3 N Y N 0 -5.882 0.239 -0.917
27 C1' C C1' R N N 0 -2.804 0.925 -0.459
28 VB V VB N N N 0 5.446 -0.866 -0.312
29 H2 H H2 N N N 0 -7.864 0.354 -1.485
30 H61N H H61N N N N 0 -6.232 -3.991 1.028
31 H62N H H62N N N N 0 -7.81 -3.748 0.507
32 H8 H H8 N N N 0 -2.093 -1.5 0.89
33 H3B H H3B N N N 0 7.366 -1.148 1.103
34 H2' H H2' N N N 0 -4.179 3.592 0.975
35 HA H HA N N N 0 -2.973 1.595 1.62
36 H3' H H3' N N N 0 -2.494 4.644 0.022
37 HB H HB N N N 0 -1.221 3.143 1.374
38 H4' H H4' N N N 0 -0.449 2.277 -1.303
39 H5'1 H H5'1 N N N 0 1.032 2.648 0.708
40 H5'2 H H5'2 N N N 0 0.334 1.183 1.439
41 H1B H H1B N N N 0 4.506 -2.775 0.801
42 H4B H H4B N N N 0 6.286 1.332 -0.793
43 H2B H H2B N N N 0 6.574 -2.04 -2.078
44 H1' H H1' N N N 0 -3.118 1.299 -1.433
45 HOA H HOA N N N 0 2.297 -1.304 1.438