Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 365

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 66


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O3P O O3P N N N 0 6.479 1.104 -1.806
2 B B B N N N -1 -1.304 1.454 1.095
3 P P P N N N 0 5.709 1.563 -0.468
4 N1 N N1 N Y N 0 -2.136 -5.651 0.366
5 O1 O O1 N N N 0 -1.603 1.673 2.415
6 C2 C C2 N Y N 0 -2.492 -4.477 -0.121
7 N3 N N3 N Y N 0 -1.69 -3.432 -0.104
8 C4 C C4 N Y N 0 -0.47 -3.524 0.414
9 C5 C C5 N Y N 0 -0.044 -4.754 0.945
10 C6 C C6 N Y N 0 -0.936 -5.839 0.904
11 N6 N N6 N N N 0 -0.572 -7.074 1.412
12 N7 N N7 N Y N 0 1.219 -4.576 1.401
13 C8 C C8 N Y N 0 1.587 -3.345 1.189
14 N9 N N9 N Y N 0 0.579 -2.656 0.582
15 C1' C C1' R N N 0 0.611 -1.247 0.182
16 C10 C C10 S N N 0 -2.296 2.934 2.459
17 C11 C C11 N Y N 0 -2.996 3.088 1.13
18 C12 C C12 N Y N 0 -2.396 2.183 0.264
19 C13 C C13 N Y N 0 -4.022 3.892 0.686
20 C14 C C14 N Y N 0 -4.454 3.802 -0.626
21 C15 C C15 N Y N 0 -3.857 2.906 -1.492
22 C16 C C16 N Y N 0 -2.824 2.093 -1.047
23 C17 C C17 N N N 0 -3.321 2.93 3.594
24 N18 N N18 N N N 0 -2.622 2.866 4.885
25 O19 O O19 N N N 0 -2.235 1.212 -1.898
26 O1P O O1P N N N 0 6.372 0.966 0.712
27 C2' C C2' R N N 0 -0.014 -0.363 1.282
28 O2' O O2' N N N 0 -1.299 0.109 0.819
29 C20 C C20 N N N 0 -2.729 1.174 -3.238
30 C21 C C21 N N N 0 -1.95 0.13 -4.04
31 C22 C C22 N N N 0 -2.479 0.09 -5.475
32 O23 O O23 N N N 0 -1.751 -0.885 -6.224
33 O2P O O2P N N N 0 5.748 3.168 -0.352
34 C3' C C3' S N N 0 0.861 0.925 1.265
35 O3' O O3' N N N 0 -0.055 1.938 0.795
36 C4' C C4' R N N 0 1.901 0.65 0.158
37 O4' O O4' N N N 0 1.975 -0.789 0.067
38 C5' C C5' N N N 0 3.262 1.229 0.551
39 O5' O O5' N N N 0 4.179 1.067 -0.533
40 H2 H H2 N N N 0 -3.477 -4.368 -0.55
41 HN6 H HN6 N N N 0 -1.197 -7.815 1.377
42 HN6A H HN6A N N N 0 0.307 -7.198 1.802
43 H8 H H8 N N N 0 2.548 -2.931 1.455
44 H1' H H1' N N N 0 0.082 -1.11 -0.761
45 H10 H H10 N N N 0 -1.583 3.746 2.602
46 H13 H H13 N N N 0 -4.49 4.593 1.362
47 H14 H H14 N N N 0 -5.259 4.433 -0.973
48 H15 H H15 N N N 0 -4.195 2.839 -2.516
49 H17 H H17 N N N 0 -3.918 3.841 3.549
50 H17A H H17A N N N 0 -3.974 2.062 3.491
51 HN18 H HN18 N N N 0 -1.963 3.624 4.977
52 HN1A H HN1A N N N 0 -3.279 2.862 5.652
53 H2' H H2' N N N 0 -0.062 -0.856 2.253
54 H20 H H20 N N N 0 -3.787 0.909 -3.228
55 H20A H H20A N N N 0 -2.605 2.154 -3.699
56 H21 H H21 N N N 0 -0.892 0.395 -4.05
57 H21A H H21A N N N 0 -2.074 -0.85 -3.579
58 H22 H H22 N N N 0 -3.536 -0.175 -5.465
59 H22A H H22A N N N 0 -2.355 1.07 -5.936
60 HO23 H HO23 N N N 0 -2.034 -0.965 -7.145
61 H3' H H3' N N N 0 1.302 1.162 2.234
62 H4' H H4' N N N 0 1.567 1.074 -0.789
63 H5' H H5' N N N 0 3.154 2.289 0.78
64 H5'A H H5'A N N N 0 3.64 0.705 1.429
65 HOP3 H HOP3 N N N 0 7.409 1.37 -1.836
66 HOP2 H HOP2 N N N 0 5.33 3.627 -1.093