Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 1YM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 8.771 -0.415 -0.344
2 C2 C C2 N N N 0 7.524 0.414 -0.028
3 O5 O O5 N N N 0 4.998 1.264 0.382
4 N6 N N6 N N N 0 4.011 -0.669 -0.089
5 C7 C C7 N Y N 0 2.744 -0.105 0.048
6 C8 C C8 N Y N 0 1.62 -0.892 -0.16
7 C9 C C9 N Y N 0 0.355 -0.318 -0.02
8 C10 C C10 N Y N 0 0.279 1.047 0.33
9 C11 C C11 N Y N 0 1.459 1.759 0.519
10 C13 C C13 N Y N 0 -1.036 1.711 0.492
11 C14 C C14 N Y N 0 -1.266 2.97 -0.065
12 C15 C C15 N Y N 0 -2.525 3.553 0.118
13 C16 C C16 N Y N 0 -3.493 2.857 0.845
14 C19 C C19 N N N 0 -2.825 4.884 -0.448
15 C27 C C27 N N N 0 -2.437 -4.391 0.037
16 C22 C C22 N Y N 0 -0.869 -1.117 -0.232
17 N23 N N23 N Y N 0 -0.998 -2.386 0.03
18 C24 C C24 N Y N 0 -2.164 -2.932 -0.223
19 N3 N N3 N N N 0 6.331 -0.422 -0.179
20 C4 C C4 N N N 0 5.109 0.1 0.05
21 N12 N N12 N Y N 0 2.631 1.173 0.38
22 N17 N N17 N Y N 0 -3.233 1.67 1.354
23 C18 C C18 N Y N 0 -2.063 1.085 1.199
24 O20 O O20 N N N 0 -1.975 5.481 -1.079
25 O21 O O21 N N N 0 -4.04 5.435 -0.266
26 C25 C C25 N Y N 0 -3.095 -2.113 -0.726
27 S26 S S26 N Y N 0 -2.392 -0.504 -0.872
28 F28 F F28 N N N 0 -3.559 -4.515 0.865
29 F29 F F29 N N N 0 -2.679 -5.044 -1.176
30 F30 F F30 N N N 0 -1.329 -4.969 0.665
31 H1 H H1 N N N 0 8.712 -0.783 -1.369
32 H2 H H2 N N N 0 9.659 0.206 -0.232
33 H3 H H3 N N N 0 8.829 -1.26 0.342
34 H4 H H4 N N N 0 7.583 0.781 0.997
35 H5 H H5 N N N 0 7.466 1.258 -0.714
36 H6 H H6 N N N 0 4.103 -1.615 -0.285
37 H7 H H7 N N N 0 1.722 -1.934 -0.427
38 H8 H H8 N N N 0 1.414 2.804 0.786
39 H9 H H9 N N N 0 -0.494 3.481 -0.621
40 H10 H H10 N N N 0 -4.468 3.298 0.992
41 H11 H H11 N N N 0 6.419 -1.351 -0.444
42 H12 H H12 N N N 0 -1.895 0.108 1.629
43 H13 H H13 N N N 0 -4.189 6.307 -0.656
44 H14 H H14 N N N 0 -4.105 -2.39 -0.992