Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1YL

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C18 C C18 N N N 0 4.728 1.94 0.118
2 C4 C C4 N Y N 0 3.91 0.675 0.071
3 C3 C C3 N Y N 0 4.526 -0.538 0.071
4 C2 C C2 N Y N 0 3.787 -1.719 0.034
5 C1 C C1 N Y N 0 2.425 -1.692 -0.004
6 C10 C C10 N Y N 0 1.754 -0.461 -0.006
7 C5 C C5 N Y N 0 2.506 0.743 0.032
8 C6 C C6 N Y N 0 1.838 1.978 0.034
9 C7 C C7 N Y N 0 0.475 2.029 -0.005
10 C8 C C8 N Y N 0 -0.289 0.855 -0.048
11 C9 C C9 N Y N 0 0.344 -0.391 -0.045
12 C11 C C11 N N N 0 -0.473 -1.616 -0.08
13 O21 O O21 N N N 0 0.044 -2.714 -0.071
14 C12 C C12 N N N 0 -1.962 -1.464 -0.128
15 O20 O O20 N N N 0 -2.676 -2.448 -0.159
16 C13 C C13 N N N 0 -2.529 -0.179 -0.137
17 C14 C C14 N N N 0 -1.77 0.949 -0.088
18 O19 O O19 N N N 0 -2.538 2.069 -0.072
19 C16 C C16 N N N 0 -3.849 1.752 -0.568
20 C15 C C15 R N N 0 -3.984 0.256 -0.201
21 C17 C C17 N N N 0 -4.667 0.091 1.158
22 H1 H H1 N N N 0 4.895 2.226 1.157
23 H2 H H2 N N N 0 5.687 1.772 -0.371
24 H3 H H3 N N N 0 4.193 2.739 -0.396
25 H4 H H4 N N N 0 5.605 -0.586 0.101
26 H8 H H8 N N N 0 -0.022 2.988 -0.002
27 H5 H H5 N N N 0 4.3 -2.669 0.034
28 H6 H H6 N N N 0 1.865 -2.615 -0.034
29 H7 H H7 N N N 0 2.408 2.895 0.068
30 H11 H H11 N N N 0 -4.61 2.346 -0.062
31 H12 H H12 N N N 0 -3.901 1.897 -1.647
32 H13 H H13 N N N 0 -4.522 -0.293 -0.975
33 H14 H H14 N N N 0 -4.152 0.702 1.899
34 H15 H H15 N N N 0 -5.707 0.409 1.084
35 H16 H H16 N N N 0 -4.628 -0.956 1.459