Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1RK

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 73


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C29 C C29 N N N 0 1.316 -4.789 1.89
2 O28 O O28 N N N 0 1.028 -3.392 1.968
3 C27 C C27 N Y N 0 1.978 -2.539 1.505
4 C30 C C30 N Y N 0 3.169 -3.05 0.978
5 C31 C C31 N Y N 0 4.137 -2.221 0.508
6 C32 C C32 N Y N 0 3.946 -0.827 0.548
7 C34 C C34 N Y N 0 4.929 0.05 0.069
8 C35 C C35 N Y N 0 4.709 1.418 0.124
9 C38 C C38 N N N 0 5.74 2.346 -0.379
10 O40 O O40 N N N 0 6.777 1.912 -0.838
11 O39 O O39 N N N 0 5.53 3.677 -0.329
12 C36 C C36 N Y N 0 3.509 1.927 0.654
13 C37 C C37 N Y N 0 2.547 1.093 1.123
14 C33 C C33 N Y N 0 2.741 -0.301 1.081
15 C15 C C15 N Y N 0 1.756 -1.181 1.555
16 C14 C C14 N N N 0 0.467 -0.644 2.119
17 N13 N N13 N N N 0 -0.473 -0.381 1.026
18 C16 C C16 N N N 0 -1.276 -1.366 0.565
19 O17 O O17 N N N 0 -1.179 -2.49 1.011
20 C12 C C12 N Y N 0 -0.552 0.895 0.451
21 C21 C C21 N Y N 0 -0.652 2.023 1.248
22 C19 C C19 N Y N 0 -0.722 3.274 0.663
23 C20 C C20 N Y N 0 -0.692 3.401 -0.713
24 C18 C C18 N Y N 0 -0.594 2.277 -1.514
25 C11 C C11 N Y N 0 -0.524 1.021 -0.937
26 O10 O O10 N N N 0 -0.434 -0.09 -1.713
27 C9 C C9 N N N 0 -1.608 -0.886 -1.853
28 C22 C C22 N N N 0 -1.226 -2.263 -2.408
29 C23 C C23 N N N 0 -0.614 -2.091 -3.8
30 O24 O O24 N N N 0 -1.55 -1.426 -4.651
31 C25 C C25 N N N 0 -1.911 -0.116 -4.208
32 C26 C C26 N N N 0 -2.572 -0.207 -2.831
33 C7 C C7 S N N 0 -2.293 -1.062 -0.505
34 N6 N N6 N N N 0 -3.002 0.171 -0.155
35 C5 C C5 N N N 0 -4.056 0.128 0.683
36 O8 O O8 N N N 0 -4.418 -0.932 1.147
37 C3 C C3 S N N 0 -4.786 1.397 1.042
38 C4 C C4 N N N 0 -3.816 2.369 1.718
39 N1 N N1 N N N 0 -5.887 1.085 1.962
40 C2 C C2 N N N 0 -6.946 2.099 1.88
41 H1 H H1 N N N 0 1.479 -5.069 0.849
42 H2 H H2 N N N 0 2.214 -5.008 2.469
43 H3 H H3 N N N 0 0.477 -5.357 2.292
44 H4 H H4 N N N 0 3.321 -4.119 0.944
45 H5 H H5 N N N 0 5.051 -2.63 0.104
46 H6 H H6 N N N 0 5.852 -0.337 -0.339
47 H7 H H7 N N N 0 6.234 4.245 -0.669
48 H8 H H8 N N N 0 3.352 2.995 0.689
49 H9 H H9 N N N 0 1.631 1.498 1.527
50 H10 H H10 N N N 0 0.035 -1.376 2.801
51 H11 H H11 N N N 0 0.664 0.283 2.658
52 H12 H H12 N N N 0 -0.676 1.926 2.323
53 H13 H H13 N N N 0 -0.799 4.155 1.284
54 H14 H H14 N N N 0 -0.746 4.38 -1.164
55 H15 H H15 N N N 0 -0.572 2.381 -2.589
56 H16 H H16 N N N 0 -0.498 -2.733 -1.746
57 H17 H H17 N N N 0 -2.116 -2.888 -2.475
58 H18 H H18 N N N 0 0.296 -1.496 -3.727
59 H19 H H19 N N N 0 -0.376 -3.07 -4.216
60 H20 H H20 N N N 0 -1.016 0.504 -4.141
61 H21 H H21 N N N 0 -2.608 0.328 -4.918
62 H22 H H22 N N N 0 -3.488 -0.794 -2.906
63 H23 H H23 N N N 0 -2.809 0.795 -2.474
64 H24 H H24 N N N 0 -3.007 -1.882 -0.567
65 H25 H H25 N N N 0 -2.712 1.019 -0.527
66 H26 H H26 N N N 0 -5.187 1.854 0.137
67 H27 H H27 N N N 0 -4.344 3.286 1.978
68 H28 H H28 N N N 0 -3.415 1.911 2.622
69 H29 H H29 N N N 0 -2.999 2.6 1.035
70 H30 H H30 N N N 0 -5.551 0.989 2.909
71 H32 H H32 N N N 0 -6.536 3.075 2.144
72 H33 H H33 N N N 0 -7.339 2.133 0.864
73 H34 H H34 N N N 0 -7.749 1.844 2.571