Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Atoms of Molecule

 Molecule : 1RD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 71


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O23 O O23 N N N 0 6.631 0.795 1.883
2 C22 C C22 N N N 0 6.726 0.463 0.718
3 O24 O O24 N N N 0 7.911 0.558 0.086
4 C25 C C25 N N N 0 9.031 1.065 0.858
5 C26 C C26 N Y N 0 10.264 1.1 -0.0090
6 S30 S S30 N Y N 0 11.434 -0.204 -0.2
7 C29 C C29 N Y N 0 12.342 0.759 -1.282
8 N28 N N28 N Y N 0 11.778 1.909 -1.436
9 C27 C C27 N Y N 0 10.66 2.123 -0.773
10 N21 N N21 N N N 0 5.647 -0.0060 0.06
11 C20 C C20 N N N 0 4.359 -0.115 0.75
12 C19 C C19 N N N 0 3.31 -0.67 -0.214
13 C18 C C18 N N N 0 1.964 -0.783 0.506
14 C17 C C17 N N N 0 0.915 -1.339 -0.459
15 N16 N N16 N N N 0 -0.373 -1.448 0.231
16 C14 C C14 N N N 0 -1.452 -1.916 -0.427
17 O15 O O15 N N N 0 -1.379 -2.166 -1.611
18 C13 C C13 S N N 0 -2.749 -2.13 0.31
19 C31 C C31 N N N 0 -2.768 -3.537 0.912
20 C33 C C33 N N N 0 -1.628 -3.674 1.922
21 C32 C C32 N N N 0 -4.106 -3.772 1.617
22 N12 N N12 N N N 0 -3.87 -1.983 -0.622
23 C10 C C10 N N N 0 -5.087 -1.629 -0.162
24 O11 O O11 N N N 0 -5.254 -1.433 1.026
25 N08 N N08 N N N 0 -6.118 -1.494 -1.019
26 C09 C C09 N N N 0 -5.916 -1.73 -2.451
27 C07 C C07 N N N 0 -7.44 -1.11 -0.519
28 C06 C C06 N Y N 0 -7.564 0.392 -0.527
29 N05 N N05 N Y N 0 -7.133 1.148 0.462
30 C34 C C34 N Y N 0 -8.115 1.066 -1.541
31 S35 S S35 N Y N 0 -8.05 2.783 -1.149
32 C04 C C04 N Y N 0 -7.294 2.423 0.341
33 C02 C C02 N N N 0 -6.87 3.446 1.363
34 C03 C C03 N N N 0 -5.854 4.403 0.735
35 C01 C C01 N N N 0 -8.093 4.237 1.831
36 H1 H H1 N N N 0 8.805 2.072 1.207
37 H2 H H2 N N N 0 9.208 0.414 1.714
38 H3 H H3 N N N 0 13.257 0.45 -1.766
39 H4 H H4 N N N 0 10.109 3.05 -0.839
40 H5 H H5 N N N 0 5.723 -0.271 -0.869
41 H6 H H6 N N N 0 4.46 -0.785 1.603
42 H7 H H7 N N N 0 4.049 0.871 1.097
43 H8 H H8 N N N 0 3.209 0.0010 -1.068
44 H9 H H9 N N N 0 3.62 -1.655 -0.562
45 H10 H H10 N N N 0 2.065 -1.454 1.359
46 H11 H H11 N N N 0 1.654 0.202 0.853
47 H12 H H12 N N N 0 0.814 -0.668 -1.312
48 H13 H H13 N N N 0 1.225 -2.324 -0.806
49 H14 H H14 N N N 0 -0.449 -1.182 1.161
50 H15 H H15 N N N 0 -2.84 -1.393 1.107
51 H16 H H16 N N N 0 -2.642 -4.273 0.118
52 H17 H H17 N N N 0 -1.692 -2.871 2.655
53 H18 H H18 N N N 0 -1.706 -4.636 2.429
54 H19 H H19 N N N 0 -0.672 -3.615 1.401
55 H20 H H20 N N N 0 -4.918 -3.673 0.898
56 H21 H H21 N N N 0 -4.119 -4.774 2.046
57 H22 H H22 N N N 0 -4.232 -3.035 2.411
58 H23 H H23 N N N 0 -3.737 -2.139 -1.57
59 H24 H H24 N N N 0 -5.628 -0.798 -2.936
60 H25 H H25 N N N 0 -5.129 -2.471 -2.589
61 H26 H H26 N N N 0 -6.843 -2.098 -2.892
62 H27 H H27 N N N 0 -8.21 -1.541 -1.159
63 H28 H H28 N N N 0 -7.565 -1.479 0.499
64 H29 H H29 N N N 0 -8.527 0.636 -2.442
65 H30 H H30 N N N 0 -6.415 2.942 2.215
66 H31 H H31 N N N 0 -6.309 4.908 -0.117
67 H32 H H32 N N N 0 -5.548 5.144 1.474
68 H33 H H33 N N N 0 -4.983 3.84 0.402
69 H34 H H34 N N N 0 -7.787 4.977 2.57
70 H35 H H35 N N N 0 -8.548 4.741 0.979
71 H36 H H36 N N N 0 -8.817 3.555 2.278