Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 1CV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 104


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 10.764 -1.52 0.448
2 C2 C C2 N N N 0 11.804 -2.076 1.423
3 S2 S S2 N N N 0 11.582 -1.04 -1.099
4 C3 C C3 S N N 0 12.393 -3.37 0.858
5 O3 O O3 N N N 0 13.609 -5.639 0.224
6 C4 C C4 N N N 0 13.34 -3.991 1.887
7 O4 O O4 N N N 0 14.783 -5.986 2.064
8 C5 C C5 N N N 0 13.92 -5.266 1.331
9 C6 C C6 N N N 0 11.262 -4.352 0.547
10 O7 O O7 N N N 0 13.116 -3.081 -0.34
11 C1' C C1* R N N 0 -7.168 -2.502 -0.657
12 C10 C C10 R N N 0 1.222 6.198 -2.573
13 O10 O O10 N N N 0 0.697 7.502 -2.316
14 C11 C C11 N N N 0 0.116 5.157 -2.385
15 C12 C C12 N N N 0 -0.391 5.205 -0.942
16 C13 C C13 N N N 0 -1.039 5.462 -3.342
17 C14 C C14 N N N 0 0.671 3.763 -2.685
18 N1A N N1A N Y N 0 -7.269 -7.134 -3.006
19 O1A O O1A N N N 0 -4.608 2.704 2.587
20 P1A P P1A N N N 0 -3.981 1.839 1.562
21 S1P S S1P N N N 0 9.96 -0.07 1.183
22 C2' C C2* R N N 0 -7.938 -2.724 0.67
23 O2' O O2* N N N 0 -9.21 -3.326 0.428
24 C2A C C2A N Y N 0 -8.247 -6.256 -2.87
25 O2A O O2A N N N 0 -2.951 0.826 2.273
26 P2A P P2A N N N 0 -2.186 4.007 0.632
27 C2P C C2P N N N 0 8.679 0.345 -0.033
28 C3' C C3* S N N 0 -8.102 -1.276 1.195
29 O3' O O3* N N N 0 -9.394 -0.767 0.86
30 P3' P P3* N N N 0 -10.447 -0.253 1.965
31 N3A N N3A N Y N 0 -8.083 -5.109 -2.245
32 O3A O O3A N N N 0 -3.188 2.753 0.501
33 C3P C C3P N N N 0 7.897 1.57 0.449
34 C4' C C4* R N N 0 -7.003 -0.482 0.463
35 O4' O O4* N N N 0 -6.27 -1.415 -0.348
36 C4A C C4A N Y N 0 -6.907 -4.786 -1.717
37 O4A O O4A N N N 0 -3.027 5.328 1.005
38 N4P N N4P N N N 0 6.862 1.905 -0.533
39 C5' C C5* N N N 0 -6.066 0.17 1.482
40 O5' O O5* N N N 0 -5.122 0.998 0.8
41 C5A C C5A N Y N 0 -5.835 -5.687 -1.835
42 O5A O O5A N N N 0 -1.194 3.736 1.696
43 C5P C C5P N N N 0 6.046 2.956 -0.319
44 O5P O O5P N N N 0 6.167 3.623 0.687
45 C6A C C6A N Y N 0 -6.059 -6.898 -2.511
46 N6A N N6A N N N 0 -5.041 -7.825 -2.659
47 O6A O O6A N N N 0 -1.423 4.233 -0.767
48 C6P C C6P N N N 0 4.981 3.301 -1.328
49 N7A N N7A N Y N 0 -4.769 -5.121 -1.221
50 O7A O O7A N N N 0 -10.682 -1.324 2.959
51 C7P C C7P N N N 0 4.2 4.525 -0.847
52 C8A C C8A N Y N 0 -5.109 -3.958 -0.745
53 O8A O O8A N N N 0 -9.855 1.048 2.706
54 N8P N N8P N N N 0 3.165 4.861 -1.828
55 N9A N N9A N Y N 0 -6.419 -3.706 -1.026
56 O9A O O9A N N N 0 -11.837 0.126 1.246
57 C9P C C9P N N N 0 2.349 5.911 -1.614
58 O9P O O9P N N N 0 2.52 6.626 -0.65
59 H1 H H1 N N N 0 10.015 -2.285 0.241
60 H2 H H2 N N N 0 12.599 -1.344 1.562
61 H2A H H2A N N N 0 11.328 -2.282 2.382
62 HS2 H HS2 N N N 0 12.464 -0.108 -0.697
63 H4 H H4 N N N 0 14.145 -3.291 2.109
64 H4A H H4A N N N 0 12.788 -4.212 2.801
65 HO4 H HO4 N N N 0 15.129 -6.796 1.664
66 H6 H H6 N N N 0 10.588 -3.91 -0.186
67 H6A H H6A N N N 0 11.682 -5.274 0.145
68 H6B H H6B N N N 0 10.711 -4.573 1.461
69 HO7 H HO7 N N N 0 13.849 -2.463 -0.218
70 H1' H H1* N N N 0 -7.854 -2.219 -1.455
71 H10 H H10 N N N 0 1.595 6.151 -3.596
72 HO10 H HO10 N N N 0 0.347 7.615 -1.421
73 H12 H H12 N N N 0 0.432 4.988 -0.261
74 H12A H H12A N N N 0 -0.786 6.198 -0.729
75 H13 H H13 N N N 0 -0.691 5.374 -4.371
76 H13A H H13A N N N 0 -1.849 4.754 -3.17
77 H13B H H13B N N N 0 -1.398 6.476 -3.165
78 H14 H H14 N N N 0 1.403 3.492 -1.923
79 H14A H H14A N N N 0 -0.143 3.039 -2.68
80 H14B H H14B N N N 0 1.15 3.765 -3.664
81 H2' H H2* N N N 0 -7.351 -3.325 1.365
82 HO2' H HO2* N N N 0 -9.16 -4.199 0.014
83 H2AA H H2AA N N N 0 -9.215 -6.487 -3.287
84 HO2A H HO2A N N N 0 -2.503 0.227 1.66
85 H2P H H2P N N N 0 9.146 0.567 -0.992
86 H2PA H H2PA N N N 0 7.998 -0.498 -0.146
87 H3' H H3* N N N 0 -7.947 -1.242 2.273
88 H3P H H3P N N N 0 7.43 1.349 1.408
89 H3PA H H3PA N N N 0 8.578 2.414 0.562
90 H4' H H4* N N N 0 -7.456 0.282 -0.169
91 HO4A H HO4A N N N 0 -3.697 5.566 0.35
92 HN4P H HN4P N N N 0 6.765 1.371 -1.337
93 H5' H H5* N N N 0 -6.649 0.778 2.174
94 H5'A H H5*A N N N 0 -5.536 -0.605 2.036
95 HN6A H HN6A N N N 0 -4.161 -7.641 -2.294
96 HN6B H HN6B N N N 0 -5.208 -8.657 -3.128
97 H6P H H6P N N N 0 5.449 3.522 -2.288
98 H6PA H H6PA N N N 0 4.301 2.457 -1.441
99 H7P H H7P N N N 0 3.733 4.304 0.113
100 H7PA H H7PA N N N 0 4.881 5.369 -0.734
101 H8A H H8A N N N 0 -4.451 -3.292 -0.207
102 HO8A H HO8A N N N 0 -9.676 1.791 2.114
103 HN8P H HN8P N N N 0 3.068 4.327 -2.632
104 HO9A H HO9A N N N 0 -12.52 0.444 1.852