Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 18M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 4.395 2.65 0.291
2 O5' O O5' N N N 0 3.093 1.804 0.714
3 C5' C C5' N N N 0 2.613 0.687 -0.038
4 C4' C C4' R N N 0 1.365 0.116 0.638
5 O4' O O4' N N N 0 0.261 1.04 0.531
6 C3' C C3' R N N 0 0.863 -1.142 -0.116
7 O3' O O3' N N N 0 1.531 -2.316 0.35
8 C2' C C2' R N N 0 -0.637 -1.172 0.266
9 O2' O O2' N N N 0 -0.86 -2.079 1.347
10 C1' C C1' R N N 0 -0.944 0.277 0.706
11 N9 N N9 N Y N 0 -2.013 0.834 -0.127
12 C8 C C8 N Y N 0 -1.848 1.597 -1.246
13 N7 N N7 N Y N 0 -3.014 1.916 -1.731
14 C5 C C5 N Y N 0 -3.981 1.378 -0.952
15 C6 C C6 N N N 0 -5.447 1.385 -0.983
16 O6 O O6 N N N 0 -6.049 1.979 -1.863
17 N1 N N1 N N N 0 -6.112 0.726 -0.021
18 C2 C C2 N N N 0 -5.476 0.082 0.934
19 N2 N N2 N N N 0 -6.208 -0.572 1.887
20 N3 N N3 N N N 0 -4.12 0.042 1.009
21 C4 C C4 N Y N 0 -3.351 0.681 0.071
22 P1 P P1 N N N 0 2.389 -3.277 -0.616
23 O11 O O11 N N N 0 1.413 -3.962 -1.697
24 O12 O O12 N N N 0 3.42 -2.479 -1.317
25 O13 O O13 N N N 0 3.103 -4.421 0.264
26 CM2 C CM2 N N N 0 -2.153 -2.687 1.339
27 OP1 O OP1 N N N 0 4.716 3.745 1.428
28 OP2 O OP2 N N N 0 5.551 1.737 0.145
29 OP3 O OP3 N N N 0 4.12 3.396 -1.109
30 H5' H H5' N N N 0 2.364 1.009 -1.048
31 H5'A H H5'A N N N 0 3.386 -0.081 -0.081
32 H4' H H4' N N N 0 1.569 -0.119 1.683
33 H3' H H3' N N N 0 0.988 -1.026 -1.192
34 H2' H H2' N N N 0 -1.245 -1.447 -0.596
35 H1' H H1' N N N 0 -1.243 0.29 1.754
36 H8 H H8 N N N 0 -0.897 1.891 -1.665
37 HN2 H HN2 N N N 0 -7.177 -0.556 1.851
38 HN2A H HN2A N N N 0 -5.758 -1.053 2.6
39 HN3 H HN3 N N N 0 -3.693 -0.445 1.731
40 HO11 H HO11 N N N 0 0.712 -4.502 -1.308
41 HO13 H HO13 N N N 0 3.639 -5.038 -0.254
42 HM2 H HM2 N N N 0 -2.243 -3.361 2.19
43 HM2A H HM2A N N N 0 -2.919 -1.914 1.405
44 HM2B H HM2B N N N 0 -2.284 -3.25 0.414
45 HOP1 H HOP1 N N N 0 5.49 4.292 1.239
46 HOP3 H HOP3 N N N 0 3.375 4.011 -1.087