Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 13V

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N3 N N3 N N N 0 -0.122 4.082 -0.091
2 C15 C C15 N Y N 0 0.875 3.123 -0.0070
3 N2 N N2 N Y N 0 0.536 1.845 0.04
4 N4 N N4 N Y N 0 2.141 3.511 0.018
5 C16 C C16 N Y N 0 3.126 2.627 0.097
6 C17 C C17 N Y N 0 2.82 1.276 0.154
7 O2 O O2 N N N 0 3.805 0.342 0.236
8 C18 C C18 N N N 0 5.152 0.819 0.265
9 C19 C C19 N N N 0 6.112 -0.368 0.358
10 O3 O O3 N N N 0 6.015 -1.154 -0.832
11 C20 C C20 N N N 0 6.875 -2.294 -0.848
12 C14 C C14 N Y N 0 1.469 0.897 0.12
13 C11 C C11 N Y N 0 1.088 -0.531 0.179
14 C10 C C10 N Y N 0 1.93 -1.592 0.273
15 N1 N N1 N Y N 0 1.211 -2.749 0.308
16 C12 C C12 N Y N 0 -0.279 -1.078 0.153
17 C9 C C9 N Y N 0 -0.138 -2.475 0.237
18 C8 C C8 N Y N 0 -1.273 -3.282 0.235
19 C7 C C7 N Y N 0 -2.515 -2.721 0.152
20 C13 C C13 N Y N 0 -1.546 -0.508 0.073
21 C6 C C6 N Y N 0 -2.666 -1.332 0.068
22 C5 C C5 N N N 0 -3.976 -0.759 -0.018
23 C4 C C4 N N N 0 -5.049 -0.289 -0.089
24 C1 C C1 N N N 0 -6.395 0.3 -0.178
25 C3 C C3 N N N 0 -6.281 1.824 -0.258
26 C2 C C2 N N N 0 -7.1 -0.225 -1.43
27 O1 O O1 N N N 0 -7.151 -0.06 0.98
28 H1 H H1 N N N 0 -1.054 3.813 -0.115
29 H2 H H2 N N N 0 0.111 5.023 -0.123
30 H3 H H3 N N N 0 4.154 2.955 0.116
31 H4 H H4 N N N 0 5.357 1.382 -0.645
32 H5 H H5 N N N 0 5.289 1.466 1.131
33 H6 H H6 N N N 0 7.132 -0.0030 0.469
34 H7 H H7 N N N 0 5.849 -0.982 1.22
35 H8 H H8 N N N 0 7.912 -1.968 -0.761
36 H9 H H9 N N N 0 6.629 -2.947 -0.011
37 H10 H H10 N N N 0 6.742 -2.837 -1.784
38 H11 H H11 N N N 0 3.007 -1.529 0.313
39 H12 H H12 N N N 0 1.594 -3.638 0.373
40 H13 H H13 N N N 0 -1.17 -4.355 0.299
41 H14 H H14 N N N 0 -3.389 -3.356 0.151
42 H15 H H15 N N N 0 -1.657 0.564 0.013
43 H16 H H16 N N N 0 -5.705 2.099 -1.142
44 H17 H H17 N N N 0 -7.277 2.26 -0.324
45 H18 H H18 N N N 0 -5.779 2.198 0.634
46 H19 H H19 N N N 0 -7.182 -1.31 -1.373
47 H20 H H20 N N N 0 -8.097 0.212 -1.496
48 H21 H H21 N N N 0 -6.524 0.05 -2.314
49 H22 H H22 N N N 0 -8.05 0.294 0.989