Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 12S

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 63


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -0.02 2.797 -0.99
2 C12 C C12 N Y N 0 4.257 -1.074 0.263
3 C13 C C13 N Y N 0 5.347 -0.586 0.957
4 C14 C C14 N Y N 0 6.546 -1.285 0.918
5 C15 C C15 N Y N 0 6.609 -2.447 0.17
6 C16 C C16 N Y N 0 5.471 -2.883 -0.5
7 C17 C C17 N N N 0 7.757 -0.778 1.658
8 C18 C C18 N N N 0 2.951 -0.324 0.307
9 C19 C C19 N N N 0 2.488 -0.023 -1.12
10 C2 C C2 N Y N 0 1.179 2.109 -1.031
11 C22 C C22 N Y N 0 -4.232 -1.096 0.413
12 C23 C C23 N Y N 0 -4.312 -2.316 1.053
13 C24 C C24 N Y N 0 -5.513 -3.011 1.045
14 C25 C C25 N Y N 0 -6.596 -2.452 0.391
15 C26 C C26 N Y N 0 -6.444 -1.218 -0.234
16 C27 C C27 N N N 0 -5.636 -4.346 1.734
17 C28 C C28 N N N 0 -2.929 -0.339 0.412
18 C29 C C29 N N N 0 -2.516 -0.035 -1.029
19 C3 C C3 N Y N 0 1.181 0.727 -1.076
20 C4 C C4 N Y N 0 -0.014 0.033 -1.076
21 C5 C C5 N Y N 0 -1.212 0.721 -1.03
22 C6 C C6 N Y N 0 -1.215 2.103 -0.989
23 C7 C C7 N N N 0 -0.023 4.303 -0.947
24 C8 C C8 N N N 0 0.0020 4.771 0.51
25 C9 C C9 N N N 0 -0.0020 6.301 0.554
26 H1 H H1 N N N 0 -8.378 -1.103 -0.92
27 H10 H H10 N N N 0 -2.394 -0.97 -1.577
28 H11 H H11 N N N 0 -3.287 0.568 -1.508
29 H12 H H12 N N N 0 -0.012 -1.046 -1.112
30 H13 H H13 N N N 0 -2.151 2.64 -0.958
31 H14 H H14 N N N 0 0.858 4.683 -1.465
32 H15 H H15 N N N 0 -0.922 4.679 -1.434
33 H16 H H16 N N N 0 -0.879 4.391 1.028
34 H17 H H17 N N N 0 0.901 4.396 0.997
35 H18 H H18 N N N 0 0.879 6.681 0.035
36 H19 H H19 N N N 0 -0.901 6.676 0.066
37 H2 H H2 N N N 0 -7.424 0.218 -1.329
38 H20 H H20 N N N 0 0.02 7.758 2.008
39 H21 H H21 N N N 0 -0.75 6.358 2.471
40 H23 H H23 N N N 0 2.113 2.651 -1.03
41 H24 H H24 N N N 0 2.352 -0.958 -1.663
42 H25 H H25 N N N 0 3.239 0.585 -1.625
43 H26 H H26 N N N 0 3.087 0.611 0.85
44 H27 H H27 N N N 0 2.2 -0.932 0.812
45 H28 H H28 N N N 0 5.267 0.329 1.524
46 H29 H H29 N N N 0 4.726 -4.362 -1.716
47 H3 H H3 N N N 0 -7.545 -2.965 0.365
48 H30 H H30 N N N 0 6.341 -4.565 -1.298
49 H31 H H31 N N N 0 7.528 -3.013 0.115
50 H32 H H32 N N N 0 8.326 -0.11 1.011
51 H33 H H33 N N N 0 7.438 -0.236 2.549
52 H34 H H34 N N N 0 8.383 -1.621 1.95
53 H4 H H4 N N N 0 -5.385 -5.142 1.032
54 H5 H H5 N N N 0 -4.952 -4.381 2.582
55 H6 H H6 N N N 0 -6.658 -4.481 2.086
56 H7 H H7 N N N 0 -3.448 -2.725 1.556
57 H8 H H8 N N N 0 -3.051 0.595 0.96
58 H9 H H9 N N N 0 -2.158 -0.943 0.891
59 N10 N N10 N N N 0 0.022 6.75 1.952
60 N11 N N11 N Y N 0 4.344 -2.191 -0.434
61 N16 N N16 N N N 0 5.518 -4.055 -1.246
62 N21 N N21 N Y N 0 -5.28 -0.588 -0.209
63 N26 N N26 N N N 0 -7.524 -0.644 -0.895