Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Atoms of Molecule

 Molecule : 0ZD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 112


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 11.46 3.835 -0.493
2 C10 C C10 N Y N 0 9.022 0.391 -1.025
3 C11 C C11 N Y N 0 8.479 1.653 -1.191
4 C12 C C12 N Y N 0 9.266 2.774 -1.02
5 C17 C C17 R N N 0 8.052 -2.306 1.141
6 C18 C C18 N N N 0 7.137 -3.481 1.497
7 C19 C C19 N N N 0 7.866 -4.421 2.458
8 C2 C C2 N Y N 0 12.804 3.694 -0.151
9 C20 C C20 N N N 0 6.765 -4.242 0.222
10 C21 C C21 N N N 0 8.425 -1.563 2.397
11 C24 C C24 N N N 0 6.064 -0.818 0.618
12 C25 C C25 N N N 0 4.926 -1.659 0.036
13 C27 C C27 N N N 0 2.492 -1.597 -0.062
14 C29 C C29 N Y N 0 1.196 -0.961 0.258
15 C3 C C3 N Y N 0 13.592 4.815 0.015
16 C30 C C30 N Y N 0 1.162 0.228 0.99
17 C31 C C31 N Y N 0 -0.048 0.823 1.289
18 C32 C C32 N Y N 0 -1.23 0.248 0.868
19 C33 C C33 N Y N 0 -1.21 -0.941 0.136
20 C34 C C34 N Y N 0 0.0060 -1.549 -0.165
21 C35 C C35 N N N 0 -2.477 -1.556 -0.314
22 C38 C C38 N N N 0 -4.909 -1.574 -0.468
23 C39 C C39 N N N 0 -6.086 -0.711 -0.0090
24 C4 C C4 N Y N 0 13.047 6.076 -0.146
25 C45 C C45 N Y N 0 -9.199 0.73 -1.079
26 C46 C C46 N Y N 0 -8.778 2.007 -0.752
27 C47 C C47 N Y N 0 -9.655 2.897 -0.166
28 C48 C C48 N Y N 0 -10.967 2.507 0.096
29 C49 C C49 N Y N 0 -11.386 1.22 -0.235
30 C5 C C5 N Y N 0 11.713 6.222 -0.479
31 C50 C C50 N Y N 0 -11.914 3.46 0.726
32 C51 C C51 N Y N 0 -13.228 3.072 0.984
33 C52 C C52 N Y N 0 -14.103 3.961 1.575
34 C53 C C53 N Y N 0 -13.682 5.237 1.901
35 C54 C C54 N Y N 0 -12.381 5.629 1.643
36 C55 C C55 N Y N 0 -11.495 4.747 1.057
37 C56 C C56 R N N 0 -7.91 -2.474 -0.087
38 C57 C C57 N N N 0 -7.86 -2.477 1.442
39 C58 C C58 N N N 0 -8.234 -1.09 1.968
40 C59 C C59 N N N 0 -6.447 -2.834 1.906
41 C5A C C5A N Y N 0 -10.5 0.338 -0.82
42 C6 C C6 N Y N 0 10.917 5.108 -0.653
43 C60 C C60 N N N 0 -7.125 -3.646 -0.617
44 C7 C C7 N Y N 0 10.609 2.633 -0.678
45 C8 C C8 N Y N 0 11.152 1.36 -0.517
46 C9 C C9 N Y N 0 10.356 0.246 -0.691
47 H1 H H1 N N N 0 -7.034 -5.616 -0.78
48 H10 H H10 N N N 0 -10.824 -0.659 -1.078
49 H11 H H11 N N N 0 -12.401 0.914 -0.034
50 H12 H H12 N N N 0 -10.48 5.054 0.856
51 H13 H H13 N N N 0 -12.057 6.627 1.9
52 H14 H H14 N N N 0 -14.37 5.929 2.364
53 H15 H H15 N N N 0 -15.12 3.66 1.779
54 H16 H H16 N N N 0 -13.557 2.076 0.729
55 H17 H H17 N N N 0 -9.325 3.893 0.088
56 H18 H H18 N N N 0 -7.759 2.306 -0.952
57 H19 H H19 N N N 0 -5.932 0.317 -0.336
58 H2 H H2 N N N 0 -8.945 -2.55 -0.417
59 H20 H H20 N N N 0 -6.155 -0.74 1.078
60 H21 H H21 N N N 0 -5.002 -2.572 -0.039
61 H22 H H22 N N N 0 -4.913 -1.645 -1.556
62 H23 H H23 N N N 0 -3.669 -0.138 0.483
63 H24 H H24 N N N 0 -2.173 0.719 1.105
64 H25 H H25 N N N 0 -0.069 1.743 1.855
65 H26 H H26 N N N 0 2.083 0.683 1.322
66 H27 H H27 N N N 0 0.027 -2.471 -0.728
67 H28 H H28 N N N 0 3.619 -0.203 0.861
68 H29 H H29 N N N 0 4.956 -2.66 0.467
69 H3 H H3 N N N 0 -8.566 -3.214 1.827
70 H30 H H30 N N N 0 5.04 -1.726 -1.046
71 H31 H H31 N N N 0 5.996 0.2 0.236
72 H32 H H32 N N N 0 5.986 -0.804 1.705
73 H33 H H33 N N N 0 8.954 -2.682 0.659
74 H34 H H34 N N N 0 9.602 -1.524 3.987
75 H35 H H35 N N N 0 6.232 -3.105 1.973
76 H36 H H36 N N N 0 7.671 -4.617 -0.254
77 H37 H H37 N N N 0 6.114 -5.078 0.476
78 H38 H H38 N N N 0 6.246 -3.571 -0.463
79 H39 H H39 N N N 0 8.771 -4.797 1.982
80 H4 H H4 N N N 0 -5.766 -2.022 1.655
81 H40 H H40 N N N 0 8.131 -3.879 3.366
82 H41 H H41 N N N 0 7.214 -5.258 2.712
83 H42 H H42 N N N 0 10.776 -0.741 -0.566
84 H43 H H43 N N N 0 12.194 1.245 -0.256
85 H44 H H44 N N N 0 7.438 1.76 -1.456
86 H45 H H45 N N N 0 8.841 3.758 -1.15
87 H46 H H46 N N N 0 9.875 5.222 -0.914
88 H47 H H47 N N N 0 11.293 7.209 -0.603
89 H48 H H48 N N N 0 13.666 6.951 -0.01
90 H49 H H49 N N N 0 14.634 4.707 0.275
91 H5 H H5 N N N 0 -6.447 -2.987 2.986
92 H50 H H50 N N N 0 13.229 2.71 -0.021
93 H6 H H6 N N N 0 -6.122 -3.748 1.41
94 H7 H H7 N N N 0 -9.314 -0.954 1.899
95 H8 H H8 N N N 0 -7.923 -0.999 3.008
96 H9 H H9 N N N 0 -7.734 -0.328 1.37
97 N16 N N16 N N N 0 7.35 -1.401 0.228
98 N26 N N26 N N N 0 3.642 -1.029 0.353
99 N37 N N37 N N N 0 -3.654 -0.965 -0.022
100 N40 N N40 N N N 0 -7.327 -1.228 -0.591
101 O14 O O14 N N N 0 8.892 -2.104 -1.567
102 O15 O O15 N N N 0 6.934 -0.638 -2.082
103 O22 O O22 N N N 0 7.85 -0.541 2.688
104 O23 O O23 N N N 0 9.398 -2.035 3.193
105 O28 O O28 N N N 0 2.52 -2.632 -0.699
106 O36 O O36 N N N 0 -2.459 -2.593 -0.947
107 O42 O O42 N N N 0 -7.065 0.382 -2.444
108 O43 O O43 N N N 0 -8.861 -1.355 -2.52
109 O61 O O61 N N N 0 -6.094 -3.46 -1.219
110 O62 O O62 N N N 0 -7.572 -4.896 -0.421
111 S13 S S13 N N N 0 8.012 -1.035 -1.246
112 S41 S S41 N N N 0 -8.071 -0.403 -1.819