Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0YP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -1.702 0.766 0.593
2 N1 N N1 N N N 0 -0.816 -0.248 0.538
3 O1 O O1 N N N 0 -1.323 1.89 0.861
4 C2 C C2 N N N 0 0.552 0.0080 0.69
5 N2 N N2 N N N 0 1.35 2.209 0.0090
6 O2 O O2 N N N 0 1.093 1.727 2.163
7 C3 C C3 N N N 0 1.014 1.364 1.004
8 C4 C C4 N N N 0 1.917 3.531 0.309
9 C5 C C5 N N N 0 3.235 3.687 -0.456
10 C6 C C6 N N N 0 2.99 3.431 -1.945
11 C7 C C7 N N N 0 2.483 2.001 -2.142
12 C8 C C8 N N N 0 1.162 1.824 -1.396
13 C9 C C9 N N N 0 1.45 -0.998 0.546
14 C10 C C10 N Y N 0 2.89 -0.711 0.608
15 C11 C C11 N Y N 0 3.722 -1.033 -0.477
16 C12 C C12 N Y N 0 5.078 -0.758 -0.407
17 C13 C C13 N Y N 0 5.609 -0.17 0.726
18 C14 C C14 N Y N 0 4.793 0.149 1.799
19 C15 C C15 N Y N 0 3.44 -0.111 1.745
20 C16 C C16 N Y N 0 -3.133 0.513 0.322
21 C17 C C17 N Y N 0 -4.053 1.562 0.379
22 C18 C C18 N Y N 0 -5.387 1.319 0.125
23 C19 C C19 N Y N 0 -5.814 0.04 -0.185
24 C20 C C20 N Y N 0 -4.907 -1.004 -0.243
25 C21 C C21 N Y N 0 -3.569 -0.774 0.0040
26 N01 N N01 N N N 1 -7.247 -0.213 -0.456
27 O01 O O01 N N N -1 -7.626 -1.339 -0.729
28 C02 C C02 N N N 0 4.12 -2.011 -2.605
29 O02 O O02 N N N 0 -8.047 0.703 -0.405
30 O03 O O03 N N N 0 3.2 -1.611 -1.588
31 BR1 BR BR1 N N N 0 0.85 -2.769 0.266
32 H1 H H1 N N N 0 -1.127 -1.156 0.393
33 H3 H H3 N N N 0 1.219 4.307 -0.0030
34 H4 H H4 N N N 0 2.102 3.615 1.38
35 H5 H H5 N N N 0 3.618 4.698 -0.319
36 H6 H H6 N N N 0 3.963 2.968 -0.078
37 H7 H H7 N N N 0 2.243 4.135 -2.313
38 H8 H H8 N N N 0 3.92 3.567 -2.497
39 H9 H H9 N N N 0 2.33 1.812 -3.205
40 H10 H H10 N N N 0 3.217 1.298 -1.749
41 H11 H H11 N N N 0 0.848 0.781 -1.451
42 H12 H H12 N N N 0 0.4 2.461 -1.845
43 H14 H H14 N N N 0 5.721 -1.004 -1.239
44 H15 H H15 N N N 0 6.667 0.041 0.775
45 H16 H H16 N N N 0 5.218 0.607 2.679
46 H17 H H17 N N N 0 2.807 0.144 2.582
47 H18 H H18 N N N 0 -3.721 2.56 0.621
48 H19 H H19 N N N 0 -6.1 2.129 0.169
49 H20 H H20 N N N 0 -5.247 -2.0 -0.485
50 H21 H H21 N N N 0 -2.862 -1.588 -0.047
51 H01 H H01 N N N 0 4.77 -2.796 -2.219
52 H04 H H04 N N N 0 3.569 -2.386 -3.467
53 H05 H H05 N N N 0 4.725 -1.154 -2.905