Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0YO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -1.375 0.91 0.046
2 C2 C C2 N Y N 0 -0.371 2.979 0.231
3 C3 C C3 N Y N 0 0.876 2.375 0.155
4 C7 C C7 N Y N 0 -3.858 0.737 0.064
5 C8 C C8 N Y N 0 -5.009 -0.067 0.0020
6 C9 C C9 N Y N 0 -4.865 -1.47 -0.136
7 C10 C C10 N Y N 0 -6.018 -2.272 -0.197
8 C11 C C11 N Y N 0 -7.248 -1.694 -0.124
9 C12 C C12 N Y N 0 -7.388 -0.314 0.011
10 C13 C C13 N Y N 0 -6.295 0.495 0.074
11 C14 C C14 N Y N 0 2.232 0.284 -0.078
12 C15 C C15 N Y N 0 2.515 -0.95 0.432
13 C16 C C16 N Y N 0 4.347 -0.121 -0.579
14 C19 C C19 N N N 0 6.635 -0.922 -0.112
15 C20 C C20 N N N 0 5.774 -0.087 -1.064
16 C21 C C21 N N N 0 1.861 4.53 0.349
17 C17 C C17 N Y N 0 3.853 -1.219 0.119
18 C18 C C18 N N N 0 4.714 -2.381 0.403
19 O1 O O1 N N N 0 4.255 -3.434 0.8
20 N5 N N5 N N N 0 6.042 -2.216 0.199
21 N4 N N4 N Y N 0 3.364 0.772 -0.697
22 C4 C C4 N Y N 0 0.932 0.977 0.014
23 N2 N N2 N Y N 0 -0.207 0.289 -0.036
24 N1 N N1 N Y N 0 -1.459 2.228 0.174
25 C5 C C5 N Y N 0 -2.622 0.111 -0.014
26 N3 N N3 N Y N 0 -3.646 -2.016 -0.206
27 C6 C C6 N Y N 0 -2.561 -1.285 -0.15
28 O2 O O2 N N N 0 2.013 3.115 0.211
29 H1 H H1 N N N 0 -0.453 4.051 0.336
30 H2 H H2 N N N 0 -3.933 1.81 0.165
31 H3 H H3 N N N 0 -5.928 -3.343 -0.303
32 H4 H H4 N N N 0 -8.13 -2.315 -0.172
33 H5 H H5 N N N 0 -8.376 0.119 0.066
34 H6 H H6 N N N 0 -6.416 1.564 0.179
35 H7 H H7 N N N 0 1.838 -1.595 0.973
36 H8 H H8 N N N 0 7.609 -1.084 -0.573
37 H9 H H9 N N N 0 5.834 -0.502 -2.07
38 H10 H H10 N N N 0 6.13 0.943 -1.069
39 H11 H H11 N N N 0 1.324 4.748 1.272
40 H12 H H12 N N N 0 2.843 5.0 0.381
41 H13 H H13 N N N 0 1.298 4.919 -0.499
42 H14 H H14 N N N 0 3.434 1.63 -1.143
43 H15 H H15 N N N 0 -1.597 -1.767 -0.211
44 H16 H H16 N N N 0 6.776 -0.368 0.816
45 H17 H H17 N N N 0 6.622 -2.991 0.261