Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0Y3

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 144


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C10 N Y N 0 -6.263 -4.263 2.535
2 C11 C C11 N Y N 0 -5.41 -4.484 1.469
3 C12 C C12 N Y N 0 -5.834 -4.242 0.175
4 C13 C C13 N Y N 0 -7.111 -3.774 -0.059
5 C19 C C19 N N N 0 -14.808 1.16 1.748
6 C2 C C2 N Y N 0 -11.907 -2.089 0.31
7 C20 C C20 R N N 0 -13.352 0.921 -1.205
8 C21 C C21 N N N 0 -14.638 1.666 -1.453
9 C23 C C23 N N N 0 -14.918 2.658 2.037
10 C24 C C24 N N N 0 -15.091 0.371 3.029
11 C26 C C26 N N N 0 -12.196 1.918 -1.108
12 C27 C C27 N N N 0 -10.875 1.156 -0.981
13 C29 C C29 N N N 0 -8.502 1.665 -0.768
14 C3 C C3 N Y N 0 -11.484 -2.336 1.604
15 C30 C C30 N N N 0 -7.363 2.647 -0.673
16 C31 C C31 N N N 0 -6.042 1.885 -0.546
17 C32 C C32 N N N 0 -4.885 2.883 -0.449
18 C34 C C34 N N N 0 -2.459 2.83 -0.227
19 C37 C C37 N Y N 0 -1.183 2.094 -0.104
20 C38 C C38 N Y N 0 0.018 2.792 0.0
21 C39 C C39 N Y N 0 1.217 2.091 0.116
22 C4 C C4 N Y N 0 -10.209 -2.81 1.837
23 C40 C C40 N Y N 0 1.207 0.694 0.122
24 C41 C C41 N Y N 0 0.013 0.0090 0.018
25 C42 C C42 N Y N 0 -1.179 0.697 -0.091
26 C43 C C43 N N N 0 2.496 2.824 0.226
27 C45 C C45 N N N 0 4.923 2.87 0.442
28 C46 C C46 N N N 0 6.076 1.87 0.55
29 C47 C C47 N N N 0 7.399 2.628 0.664
30 C48 C C48 N N N 0 8.535 1.643 0.77
31 C5 C C5 N Y N 0 -9.347 -3.04 0.767
32 C50 C C50 N N N 0 10.907 1.128 0.984
33 C51 C C51 N N N 0 12.231 1.886 1.099
34 C54 C C54 R N N 0 13.384 0.886 1.206
35 C57 C C57 N N N 0 14.889 1.025 -1.739
36 C58 C C58 N N N 0 15.097 2.523 -1.967
37 C59 C C59 N N N 0 15.116 0.273 -3.052
38 C6 C C6 N Y N 0 -9.778 -2.789 -0.534
39 C63 C C63 N Y N 0 11.864 -2.093 -0.292
40 C64 C C64 N Y N 0 10.997 -2.286 0.769
41 C65 C C65 N Y N 0 9.706 -2.716 0.538
42 C66 C C66 N Y N 0 9.28 -2.967 -0.765
43 C67 C C67 N Y N 0 10.16 -2.777 -1.828
44 C68 C C68 N Y N 0 11.447 -2.341 -1.587
45 C69 C C69 N Y N 0 7.896 -3.437 -1.018
46 C7 C C7 N Y N 0 -11.057 -2.321 -0.756
47 C70 C C70 N Y N 0 7.468 -3.682 -2.321
48 C71 C C71 N Y N 0 6.181 -4.124 -2.551
49 C72 C C72 N Y N 0 5.312 -4.311 -1.491
50 C73 C C73 N Y N 0 5.729 -4.063 -0.196
51 C74 C C74 N Y N 0 7.016 -3.627 0.046
52 C75 C C75 N N N 0 14.673 1.629 1.442
53 C8 C C8 N Y N 0 -7.973 -3.544 1.012
54 C9 C C9 N Y N 0 -7.542 -3.794 2.313
55 H1 H H1 N N N 0 -12.152 -2.157 2.433
56 H10 H H10 N N N 0 15.972 3.767 3.47
57 H11 H H11 N N N 0 13.199 0.206 2.038
58 H12 H H12 N N N 0 12.129 -2.192 -2.411
59 H13 H H13 N N N 0 9.835 -2.97 -2.84
60 H14 H H14 N N N 0 7.341 -3.434 1.058
61 H15 H H15 N N N 0 5.047 -4.211 0.628
62 H16 H H16 N N N 0 4.304 -4.653 -1.675
63 H17 H H17 N N N 0 5.85 -4.319 -3.56
64 H18 H H18 N N N 0 8.144 -3.532 -3.15
65 H19 H H19 N N N 0 9.029 -2.862 1.367
66 H2 H H2 N N N 0 -9.88 -3.002 2.848
67 H20 H H20 N N N 0 11.33 -2.095 1.778
68 H21 H H21 N N N 0 15.597 0.67 -0.99
69 H22 H H22 N N N 0 16.125 0.469 -3.413
70 H23 H H23 N N N 0 14.992 -0.797 -2.884
71 H24 H H24 N N N 0 14.392 0.611 -3.794
72 H25 H H25 N N N 0 14.935 3.059 -1.031
73 H26 H H26 N N N 0 16.114 2.701 -2.316
74 H27 H H27 N N N 0 14.389 2.878 -2.715
75 H28 H H28 N N N 0 12.213 2.516 1.988
76 H29 H H29 N N N 0 12.371 2.508 0.215
77 H3 H H3 N N N 0 -9.114 -2.966 -1.368
78 H30 H H30 N N N 0 10.925 0.497 0.095
79 H31 H H31 N N N 0 10.767 0.505 1.868
80 H32 H H32 N N N 0 9.985 3.038 0.893
81 H33 H H33 N N N 0 7.381 3.258 1.553
82 H34 H H34 N N N 0 7.54 3.25 -0.22
83 H35 H H35 N N N 0 6.094 1.239 -0.339
84 H36 H H36 N N N 0 5.935 1.247 1.434
85 H37 H H37 N N N 0 4.905 3.5 1.331
86 H38 H H38 N N N 0 5.063 3.492 -0.442
87 H39 H H39 N N N 0 3.649 1.174 0.337
88 H4 H H4 N N N 0 -11.393 -2.126 -1.764
89 H40 H H40 N N N 0 0.021 3.872 -0.0090
90 H41 H H41 N N N 0 2.136 0.149 0.207
91 H42 H H42 N N N 0 0.011 -1.071 0.023
92 H43 H H43 N N N 0 -2.109 0.155 -0.172
93 H44 H H44 N N N 0 -3.619 1.183 -0.319
94 H45 H H45 N N N 0 -5.025 3.517 0.427
95 H46 H H46 N N N 0 -4.863 3.501 -1.346
96 H47 H H47 N N N 0 -5.902 1.251 -1.421
97 H48 H H48 N N N 0 -6.064 1.267 0.351
98 H49 H H49 N N N 0 -7.502 3.281 0.203
99 H5 H H5 N N N 0 -8.207 -3.622 3.146
100 H50 H H50 N N N 0 -7.34 3.266 -1.57
101 H51 H H51 N N N 0 -9.946 3.064 -0.912
102 H52 H H52 N N N 0 -10.735 0.522 -1.856
103 H53 H H53 N N N 0 -10.897 0.537 -0.084
104 H54 H H54 N N N 0 -12.335 2.552 -0.233
105 H55 H H55 N N N 0 -12.174 2.537 -2.005
106 H56 H H56 N N N 0 -13.168 0.23 -2.028
107 H57 H H57 N N N 0 -14.143 2.286 -3.307
108 H58 H H58 N N N 0 -16.087 3.431 -3.724
109 H59 H H59 N N N 0 -15.533 0.883 0.984
110 H6 H H6 N N N 0 -4.41 -4.851 1.647
111 H60 H H60 N N N 0 -15.136 -0.693 2.798
112 H61 H H61 N N N 0 -14.294 0.553 3.751
113 H62 H H62 N N N 0 -16.043 0.693 3.45
114 H63 H H63 N N N 0 -14.717 3.22 1.125
115 H64 H H64 N N N 0 -15.924 2.887 2.39
116 H65 H H65 N N N 0 -14.193 2.935 2.802
117 H66 H H66 N N N 0 -5.926 -4.453 3.543
118 H7 H H7 N N N 0 -5.164 -4.417 -0.654
119 H8 H H8 N N N 0 -7.442 -3.586 -1.069
120 H9 H H9 N N N 0 14.026 2.616 3.076
121 N16 N N16 N N N 0 -13.457 0.17 0.049
122 N22 N N22 N N N 0 -14.832 2.305 -2.624
123 N28 N N28 N N N 0 -9.768 2.111 -0.888
124 N33 N N33 N N N 0 -3.621 2.153 -0.327
125 N44 N N44 N N N 0 3.655 2.144 0.333
126 N49 N N49 N N N 0 9.803 2.085 0.881
127 N55 N N55 N N N 0 13.483 0.119 -0.038
128 N76 N N76 N N N 0 14.78 2.481 2.481
129 O14 O O14 N N N 0 -13.867 -1.846 -1.313
130 O15 O O15 N N N 0 -14.313 -1.868 1.146
131 O17 O O17 N N N 0 -13.49 0.859 1.286
132 O23 O O23 N N N 0 -16.04 3.005 -2.857
133 O25 O O25 N N N 0 -15.5 1.69 -0.6
134 O35 O O35 N N N 0 -2.461 4.046 -0.237
135 O36 O O36 N N N 0 -8.279 0.473 -0.738
136 O52 O O52 N N N 0 2.503 4.039 0.221
137 O53 O O53 N N N 0 8.308 0.451 0.756
138 O56 O O56 N N N 0 13.556 0.793 -1.281
139 O61 O O61 N N N 0 14.285 -1.957 -1.104
140 O62 O O62 N N N 0 13.814 -1.895 1.35
141 O77 O O77 N N N 0 15.991 3.18 2.702
142 O78 O O78 N N N 0 15.616 1.46 0.697
143 S1 S S1 N N N 0 -13.536 -1.484 0.02
144 S60 S S60 N N N 0 13.509 -1.536 0.0090