Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0SD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 69


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 3.641 -0.378 1.229
2 C C C N N N 0 8.213 -0.659 -1.192
3 O O O N N N 0 -0.051 5.102 -0.743
4 C1 C C1 N N N 0 6.799 -1.117 -1.554
5 N1 N N1 N Y N 0 0.615 0.462 1.441
6 O1 O O1 N N N 0 6.207 -0.173 -2.448
7 C2 C C2 N N N 0 6.866 -2.488 -2.231
8 N2 N N2 N Y N 0 -2.651 1.199 0.088
9 C3 C C3 N N N 0 5.954 -1.217 -0.283
10 N3 N N3 N Y N 0 -2.492 -1.084 0.546
11 C4 C C4 N N N 0 5.88 0.156 0.391
12 N4 N N4 N Y N 0 -5.759 -3.669 -0.222
13 C5 C C5 N N N 0 4.984 0.064 1.628
14 N5 N N5 N Y N 0 -6.851 -2.974 -0.755
15 C6 C C6 N N N 0 3.681 -1.714 0.622
16 N6 N N6 N N N 0 -0.897 2.72 0.481
17 C7 C C7 N N N 0 4.538 -1.676 -0.645
18 C8 C C8 N N N 0 2.716 -0.344 2.369
19 C9 C C9 N Y N 0 1.307 -0.564 1.88
20 C10 C C10 N Y N 0 0.772 -1.85 1.904
21 C11 C C11 N Y N 0 -0.503 -2.068 1.464
22 C12 C C12 N Y N 0 -1.238 -0.965 0.995
23 C13 C C13 N Y N 0 -0.63 0.314 1.0
24 C14 C C14 N Y N 0 -1.419 1.444 0.507
25 C15 C C15 N Y N 0 -3.161 -0.032 0.112
26 C16 C C16 N Y N 0 -4.544 -0.229 -0.372
27 C17 C C17 N Y N 0 -5.288 0.838 -0.838
28 C18 C C18 N Y N 0 -6.591 0.666 -1.296
29 C19 C C19 N Y N 0 -7.207 -0.542 -1.315
30 C20 C C20 N Y N 0 -6.535 -1.696 -0.861
31 C21 C C21 N Y N 0 -5.156 -1.56 -0.368
32 C22 C C22 N Y N 0 -4.748 -2.819 0.013
33 C23 C C23 N N N 0 -1.876 3.678 -0.053
34 C24 C C24 N N N 0 -1.279 5.088 -0.0090
35 C25 C C25 N N N 0 0.925 4.181 -0.249
36 C26 C C26 N N N 0 0.35 2.763 -0.296
37 H2 H H2 N N N 0 8.816 -0.588 -2.098
38 H3 H H3 N N N 0 8.166 0.318 -0.71
39 H4 H H4 N N N 0 8.665 -1.379 -0.51
40 H5 H H5 N N N 0 5.307 -0.4 -2.721
41 H6 H H6 N N N 0 7.318 -3.208 -1.549
42 H7 H H7 N N N 0 5.858 -2.815 -2.49
43 H8 H H8 N N N 0 7.468 -2.418 -3.137
44 H9 H H9 N N N 0 6.406 -1.935 0.4
45 H10 H H10 N N N 0 6.881 0.469 0.689
46 H11 H H11 N N N 0 5.464 0.882 -0.307
47 H12 H H12 N N N 0 -5.737 -4.622 -0.046
48 H13 H H13 N N N 0 4.918 1.044 2.102
49 H14 H H14 N N N 0 5.408 -0.652 2.331
50 H15 H H15 N N N 0 4.111 -2.422 1.331
51 H16 H H16 N N N 0 2.668 -2.027 0.366
52 H17 H H17 N N N 0 4.101 -0.978 -1.359
53 H18 H H18 N N N 0 4.58 -2.671 -1.086
54 H19 H H19 N N N 0 2.981 -1.131 3.076
55 H20 H H20 N N N 0 2.782 0.625 2.863
56 H21 H H21 N N N 0 1.366 -2.675 2.271
57 H22 H H22 N N N 0 -0.933 -3.059 1.475
58 H23 H H23 N N N 0 -4.849 1.825 -0.847
59 H24 H H24 N N N 0 -7.133 1.53 -1.651
60 H25 H H25 N N N 0 -8.22 -0.621 -1.681
61 H26 H H26 N N N 0 -3.784 -3.077 0.427
62 H27 H H27 N N N 0 -2.117 3.417 -1.084
63 H28 H H28 N N N 0 -2.782 3.648 0.552
64 H29 H H29 N N N 0 -1.088 5.37 1.026
65 H30 H H30 N N N 0 -1.979 5.793 -0.457
66 H31 H H31 N N N 0 1.82 4.232 -0.87
67 H32 H H32 N N N 0 1.181 4.438 0.779
68 H33 H H33 N N N 0 1.07 2.065 0.133
69 H34 H H34 N N N 0 0.146 2.487 -1.33