Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0RD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 55


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CL1 CL CL1 N N N 0 -6.918 -2.918 0.635
2 C23 C C23 N Y N 0 -5.277 -2.358 0.555
3 C11 C C11 N Y N 0 -4.932 -1.354 -0.334
4 C30 C C30 N Y N 0 -4.317 -2.911 1.383
5 C22 C C22 N Y N 0 -3.011 -2.465 1.321
6 C18 C C18 N Y N 0 -2.662 -1.463 0.428
7 O32 O O32 N N N 0 -1.377 -1.023 0.366
8 C34 C C34 N N N 0 -0.438 -1.638 1.25
9 C3 C C3 N Y N 0 -3.627 -0.907 -0.399
10 S1 S S1 N N N 0 -3.189 0.371 -1.531
11 O12 O O12 N N N 0 -2.029 -0.081 -2.216
12 O13 O O13 N N N 0 -4.387 0.746 -2.195
13 N2 N N2 N N N 0 -2.721 1.681 -0.633
14 C9 C C9 N N N 0 -3.618 2.74 -0.163
15 C17 C C17 N N N 0 -2.719 3.715 0.615
16 C5 C C5 N Y N 0 -1.335 3.112 0.522
17 C4 C C4 N Y N 0 -1.415 1.936 -0.209
18 C10 C C10 N Y N 0 -0.124 3.547 1.03
19 C33 C C33 N N N 0 -0.061 4.825 1.827
20 C16 C C16 N Y N 0 1.026 2.816 0.813
21 C8 C C8 N Y N 0 0.964 1.633 0.075
22 C7 C C7 N Y N 0 -0.258 1.19 -0.426
23 C6 C C6 N N N 0 2.191 0.844 -0.164
24 O20 O O20 N N N 0 2.136 -0.186 -0.807
25 N14 N N14 N N N 0 3.371 1.268 0.332
26 C24 C C24 N Y N 0 4.507 0.471 0.203
27 C28 C C28 N Y N 0 5.755 1.064 0.038
28 C25 C C25 N Y N 0 6.879 0.28 -0.09
29 C29 C C29 N Y N 0 4.391 -0.915 0.244
30 C26 C C26 N Y N 0 5.511 -1.705 0.117
31 C19 C C19 N Y N 0 6.766 -1.113 -0.054
32 C15 C C15 N N N 0 7.968 -1.956 -0.192
33 O21 O O21 N N N 0 7.868 -3.167 -0.156
34 O27 O O27 N N N 0 9.177 -1.384 -0.357
35 H1 H H1 N N N 0 -5.684 -0.921 -0.976
36 H2 H H2 N N N 0 -4.589 -3.691 2.079
37 H3 H H3 N N N 0 -2.261 -2.897 1.969
38 H4 H H4 N N N 0 -0.752 -1.479 2.282
39 H5 H H5 N N N 0 -0.392 -2.708 1.045
40 H6 H H6 N N N 0 0.547 -1.196 1.098
41 H7 H H7 N N N 0 -4.082 3.247 -1.01
42 H8 H H8 N N N 0 -4.382 2.325 0.494
43 H9 H H9 N N N 0 -2.737 4.701 0.15
44 H10 H H10 N N N 0 -3.038 3.778 1.655
45 H11 H H11 N N N 0 -0.218 4.603 2.882
46 H12 H H12 N N N 0 0.917 5.287 1.694
47 H13 H H13 N N N 0 -0.836 5.508 1.479
48 H14 H H14 N N N 0 1.969 3.159 1.211
49 H15 H H15 N N N 0 -0.306 0.273 -0.995
50 H16 H H16 N N N 0 3.429 2.127 0.778
51 H17 H H17 N N N 0 5.842 2.14 0.011
52 H18 H H18 N N N 0 7.848 0.74 -0.218
53 H19 H H19 N N N 0 3.421 -1.372 0.377
54 H20 H H20 N N N 0 5.42 -2.781 0.148
55 H21 H H21 N N N 0 9.935 -1.978 -0.442