Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0R8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C N Y N 0 4.875 -1.249 -0.131
2 C01 C C01 N Y N 0 3.688 -0.528 0.043
3 C02 C C02 N Y N 0 3.738 0.844 0.314
4 C03 C C03 N Y N 0 4.944 1.479 0.402
5 C04 C C04 N Y N 0 6.128 0.759 0.221
6 C05 C C05 N Y N 0 6.08 -0.611 -0.05
7 C1 C C1 N N N 0 1.388 -1.742 -0.124
8 C1' C C1' R N N 0 -3.497 -1.672 0.034
9 C2 C C2 N N N 0 -2.258 -3.712 -0.394
10 C2' C C2' N N N 0 -3.938 -1.743 1.512
11 C3 C C3 N N N 0 2.424 -1.195 -0.049
12 C3' C C3' N N N 0 -3.444 -0.376 2.066
13 C4 C C4 N N N 0 0.048 -3.848 -0.493
14 C4' C C4' S N N 0 -3.646 0.534 0.829
15 C5 C C5 N N N 0 0.125 -2.409 -0.217
16 C5' C C5' N N N 0 -2.706 1.739 0.896
17 C6 C C6 N N N 0 -1.059 -1.717 -0.047
18 C7 C C7 N N N 0 7.392 1.426 0.313
19 C8 C C8 N N N 0 8.428 1.973 0.388
20 H1' H H1' N N N 0 -4.266 -2.11 -0.602
21 H14 H H14 N N N 0 2.823 1.4 0.454
22 H15 H H15 N N N 0 4.982 2.538 0.611
23 H16 H H16 N N N 0 6.995 -1.166 -0.19
24 H17 H H17 N N N 0 4.838 -2.309 -0.336
25 H18 H H18 N N N 0 9.355 2.462 0.455
26 H2' H H2' N N N 0 -5.022 -1.825 1.592
27 H2'' H H2'' N N N 0 -3.446 -2.57 2.025
28 H3' H H3' N N N 0 -2.392 -0.424 2.351
29 H3'' H H3'' N N N 0 -4.06 -0.046 2.902
30 H41 H H41 N N N 0 2.06 -4.159 -0.614
31 H42 H H42 N N N 0 1.131 -5.538 -0.854
32 H5' H H5' N N N 0 -1.673 1.398 0.828
33 H5'' H H5'' N N N 0 -2.854 2.263 1.84
34 H6 H H6 N N N 0 -1.051 -0.656 0.157
35 H7 H H7 N N N 0 -4.683 0.865 0.769
36 HOP2 H HOP2 N N N 0 -0.528 3.129 -1.566
37 HOP3 H H1 N N Y 0 -2.417 5.641 -1.86
38 N1 N N1 N N N 0 -2.235 -2.393 -0.144
39 N3 N N3 N N N 0 -1.145 -4.421 -0.569
40 N4 N N4 N N N 0 1.192 -4.588 -0.671
41 O2 O O2 N N N 0 -3.335 -4.279 -0.467
42 O4' O O4' N N N 0 -3.319 -0.291 -0.301
43 O5' O O5' N N N 0 -2.987 2.624 -0.19
44 OP1 O OP1 N N N 0 -2.251 4.83 0.793
45 OP2 O OP2 N N N 0 -0.647 3.671 -0.774
46 OP3 O OP3 N N Y 0 -2.851 4.8 -1.658
47 P P P N N N 0 -2.186 4.0 -0.43