Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0LD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 53


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C33 C C33 N Y N 0 -7.314 -0.561 -0.48
2 C32 C C32 N Y N 0 -8.635 -0.844 -0.191
3 C4 C C4 N N N 0 -1.545 0.632 0.908
4 C13 C C13 N N N 0 3.568 -0.811 -0.139
5 C20 C C20 N Y N 0 -2.922 0.348 0.5
6 C21 C C21 N Y N 0 5.145 0.904 0.79
7 C18 C C18 N Y N 0 3.052 1.645 -0.088
8 C16 C C16 N Y N 0 -4.094 0.089 1.18
9 C19 C C19 N Y N 0 3.931 0.612 0.196
10 C31 C C31 N Y N 0 -9.049 -0.953 1.123
11 C30 C C30 N Y N 0 -8.143 -0.779 2.154
12 C29 C C29 N Y N 0 -6.821 -0.496 1.872
13 C28 C C28 N Y N 0 -6.401 -0.386 0.553
14 C17 C C17 N Y N 0 3.429 2.944 0.239
15 C15 C C15 N Y N 0 4.66 3.155 0.843
16 C22 C C22 N Y N 0 -3.246 0.304 -0.928
17 C3 C C3 N N N 0 -0.613 0.851 -0.058
18 C2 C C2 N N N 0 -0.986 0.797 -1.468
19 C1 C C1 N N N 0 5.083 4.556 1.203
20 C14 C C14 N N N 0 1.719 1.368 -0.735
21 N12 N N12 N Y N 0 5.47 2.145 1.092
22 N10 N N10 N Y N 0 -4.525 0.036 -1.022
23 N11 N N11 N Y N 0 -5.061 -0.099 0.264
24 N9 N N9 N N N 0 -2.244 0.531 -1.858
25 N8 N N8 N N N 0 0.712 1.132 0.303
26 O6 O O6 N N N 0 6.002 -3.914 0.47
27 O27 O O27 N N N 0 4.322 -3.577 -1.384
28 O5 O O5 N N N 0 -0.132 0.997 -2.315
29 O7 O O7 N N N 0 3.417 -3.902 0.95
30 O26 O O26 N N N 0 2.6 3.989 -0.02
31 O25 O O25 N N N 0 -2.553 0.49 -3.239
32 O24 O O24 N N N 0 4.635 -1.679 0.25
33 P23 P P23 N N N 0 4.588 -3.274 0.04
34 H1 H H1 N N N 0 -6.99 -0.481 -1.507
35 H2 H H2 N N N 0 -9.345 -0.98 -0.994
36 H3 H H3 N N N 0 -1.276 0.672 1.953
37 H4 H H4 N N N 0 2.659 -1.09 0.395
38 H5 H H5 N N N 0 3.4 -0.901 -1.212
39 H6 H H6 N N N 0 5.834 0.103 1.014
40 H7 H H7 N N N 0 -4.213 0.045 2.252
41 H8 H H8 N N N 0 -10.082 -1.174 1.346
42 H9 H H9 N N N 0 -8.469 -0.864 3.18
43 H10 H H10 N N N 0 -6.114 -0.359 2.677
44 H11 H H11 N N N 0 4.749 4.787 2.215
45 H12 H H12 N N N 0 6.169 4.632 1.152
46 H13 H H13 N N N 0 4.636 5.262 0.503
47 H14 H H14 N N N 0 1.423 2.226 -1.339
48 H15 H H15 N N N 0 1.8 0.487 -1.371
49 H16 H H16 N N N 0 0.962 1.169 1.239
50 H17 H H17 N N N 0 6.046 -4.874 0.369
51 H18 H H18 N N N 0 3.527 -3.741 1.897
52 H19 H H19 N N N 0 1.992 4.197 0.702
53 H20 H H20 N N N 0 -1.797 0.665 -3.816