Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0DV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 76


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 0.51 -1.638 -1.306
2 C2 C C2 R N N 0 -0.126 -2.944 -0.822
3 C3 C C3 R N N 0 0.323 -3.219 0.616
4 C4 C C4 R N N 0 1.853 -3.266 0.662
5 C5 C C5 R N N 0 2.412 -1.948 0.121
6 C6 C C6 N N N 0 3.941 -2.009 0.107
7 CAA C CAA R N N 0 -1.46 1.168 -2.21
8 CAB C CAB S N N 0 -2.152 0.271 -1.242
9 CAC C CAC N N N 0 -2.199 0.32 0.244
10 CAD C CAD N N N 0 -1.588 1.018 1.161
11 CAE C CAE R N N 0 -0.692 2.197 0.986
12 CAF C CAF N N N 0 0.547 1.726 0.274
13 CAG C CAG R N N 0 0.62 0.7 -0.831
14 CAH C CAH R N N 0 -0.0020 1.45 -1.984
15 CAI C CAI N N N 0 -3.681 0.221 -1.505
16 CAJ C CAJ N N N 0 -4.126 -0.868 -0.518
17 CAK C CAK S N N 0 -3.154 -0.8 0.661
18 CAL C CAL N N N 0 -0.204 2.578 2.408
19 CAM C CAM N N N 0 1.196 3.082 2.04
20 CAN C CAN N N N 0 1.597 2.297 0.818
21 CAO C CAO N N N 0 -1.379 3.417 0.372
22 CAP C CAP N N N 0 3.019 2.149 0.352
23 CAQ C CAQ N N N 0 3.545 3.506 -0.118
24 CAR C CAR N N N 0 3.883 1.638 1.507
25 CAS C CAS N N N 0 -2.245 2.451 -2.509
26 CAV C CAV N N N 0 -3.911 -0.431 1.939
27 H1 H H1 N N N 0 2.93 3.87 -0.94
28 H10 H H10 N N N 0 -0.158 1.7 3.037
29 H11 H H11 N N N 0 -0.819 3.368 2.815
30 H12 H H12 N N N 0 -1.42 3.304 -0.711
31 H13 H H13 N N N 0 -2.392 3.5 0.767
32 H14 H H14 N N N 0 -0.816 4.316 0.623
33 H15 H H15 N N N 0 -1.711 0.673 2.208
34 H16 H H16 N N N 0 -2.603 -1.729 0.78
35 H17 H H17 N N N 0 -3.197 -0.175 2.722
36 H18 H H18 N N N 0 -4.559 0.423 1.744
37 H19 H H19 N N N 0 -5.211 -1.381 3.168
38 H2 H H2 N N N 0 3.505 4.217 0.708
39 H20 H H20 N N N 0 -4.065 -1.845 -0.994
40 H21 H H21 N N N 0 -5.14 -0.671 -0.18
41 H22 H H22 N N N 0 -3.873 -0.081 -2.525
42 H23 H H23 N N N 0 -4.145 1.163 -1.248
43 H24 H H24 N N N 0 -1.824 -0.777 -1.499
44 H25 H H25 N N N 0 -1.492 0.608 -3.201
45 H26 H H26 N N N 0 -2.629 2.867 -1.577
46 H27 H H27 N N N 0 -1.586 3.177 -2.986
47 H28 H H28 N N N 0 -3.077 2.222 -3.174
48 H29 H H29 N N N 0 0.541 1.123 -2.913
49 H3 H H3 N N N 0 4.576 3.399 -0.455
50 H30 H H30 N N N 0 1.186 3.08 -1.753
51 H31 H H31 N N N 0 1.694 0.501 -1.077
52 H32 H H32 N N N 0 0.228 -1.459 -2.343
53 H33 H H33 N N N 0 2.088 -1.126 0.759
54 H34 H H34 N N N 0 4.305 -2.241 1.109
55 H35 H H35 N N N 0 4.267 -2.785 -0.586
56 H36 H H36 N N N 0 5.431 -0.713 -0.342
57 H37 H H37 N N N 0 2.182 -3.407 1.691
58 H38 H H38 N N N 0 2.007 -5.218 0.144
59 H39 H H39 N N N 0 -0.082 -4.176 0.947
60 H4 H H4 N N N 0 3.059 1.438 -0.473
61 H40 H H40 N N N 0 -1.112 -2.145 1.56
62 H41 H H41 N N N 0 0.19 -3.764 -1.466
63 H42 H H42 N N N 0 -1.904 -2.651 -1.747
64 H5 H H5 N N N 0 3.542 0.647 1.806
65 H6 H H6 N N N 0 4.923 1.583 1.186
66 H7 H H7 N N N 0 3.8 2.322 2.353
67 H8 H H8 N N N 0 1.888 2.877 2.853
68 H9 H H9 N N N 0 1.168 4.142 1.811
69 O1 O O1 N N N 0 0.051 -0.555 -0.494
70 O2 O O2 N N N 0 -1.55 -2.826 -0.864
71 O3 O O3 N N N 0 -0.149 -2.177 1.472
72 O4 O O4 N N N 0 2.323 -4.35 -0.142
73 O5 O O5 N N N 0 1.932 -1.738 -1.208
74 O6 O O6 N N N 0 4.465 -0.747 -0.31
75 OAU O OAU N N N 0 0.256 2.858 -1.898
76 OBH O OBH N N N 0 -4.702 -1.543 2.361