Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 0D2

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O20 O O20 N N N 0 0.1 0.733 -2.576
2 C19 C C19 N N N 0 -0.138 1.22 -1.492
3 N16 N N16 N N N 0 -0.844 2.341 -1.241
4 C18 C C18 S N N 0 0.292 0.694 -0.137
5 N17 N N17 N N N 0 -0.271 1.673 0.809
6 C15 C C15 N N N 0 -0.919 2.592 0.071
7 O14 O O14 N N N 0 -1.504 3.547 0.543
8 C21 C C21 N Y N 0 1.795 0.66 -0.034
9 C26 C C26 N Y N 0 2.546 0.123 -1.063
10 C25 C C25 N Y N 0 3.925 0.092 -0.968
11 C24 C C24 N Y N 0 4.552 0.598 0.156
12 C23 C C23 N Y N 0 3.801 1.134 1.184
13 C22 C C22 N Y N 0 2.422 1.17 1.087
14 C5 C C5 R N N 0 -0.295 -0.697 0.11
15 N4 N N4 N N N 0 0.21 -1.658 -0.886
16 C3 C C3 N N N 0 0.882 -2.602 -0.204
17 O13 O O13 N N N 0 1.431 -3.552 -0.727
18 C1 C C1 N N N 0 0.2 -1.258 1.429
19 O12 O O12 N N N 0 0.022 -0.795 2.535
20 N2 N N2 N N N 0 0.88 -2.379 1.115
21 C6 C C6 N Y N 0 -1.801 -0.648 0.084
22 C7 C C7 N Y N 0 -2.491 -1.19 -0.985
23 C8 C C8 N Y N 0 -3.873 -1.144 -1.009
24 C9 C C9 N Y N 0 -4.564 -0.557 0.034
25 C10 C C10 N Y N 0 -3.873 -0.016 1.103
26 C11 C C11 N Y N 0 -2.492 -0.067 1.13
27 H1 H H1 N N N 0 -1.247 2.896 -1.926
28 H2 H H2 N N N 0 -0.194 1.655 1.776
29 H3 H H3 N N N 0 2.057 -0.271 -1.94
30 H4 H H4 N N N 0 4.512 -0.327 -1.771
31 H5 H H5 N N N 0 5.63 0.573 0.23
32 H6 H H6 N N N 0 4.291 1.529 2.062
33 H7 H H7 N N N 0 1.835 1.593 1.889
34 H8 H H8 N N N 0 0.083 -1.617 -1.847
35 H9 H H9 N N N 0 1.313 -2.954 1.766
36 H10 H H10 N N N 0 -1.951 -1.648 -1.8
37 H11 H H11 N N N 0 -4.412 -1.567 -1.844
38 H12 H H12 N N N 0 -5.643 -0.518 0.013
39 H13 H H13 N N N 0 -4.413 0.442 1.918
40 H14 H H14 N N N 0 -1.953 0.356 1.965