xml query editor


 Help on xml    

Examples

Secondary Structure Pattern

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE query SYSTEM "http://www.ebi.ac.uk/pdbe-site/pdbemotif/query.dtd">
<!-- Search for Helix - Loop - Helix where the length of the loop between helices is no more than 7 residues-->
<query>
<declaration>
<ssmotif name="p" maxloop="7">HLH</ssmotif>
</declaration>
</query>

PROSITE format pattern query

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE query SYSTEM "http://www.ebi.ac.uk/pdbe-site/pdbemotif/query.dtd">
<!-- Search for pattern D-[AI]-G-x-H -->
<query>
<declaration>
<pattern name="p">D-[AI]-G-x-H</pattern>
</declaration>
</query>

UNIPROT/SWISSPROT query

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE query SYSTEM "http://www.ebi.ac.uk/pdbe-site/pdbemotif/query.dtd">
<!-- Search for UNIPROT sequences with identifier Q16539 -->
<query>
<declaration>
<swissprot name="p">Q16539</swissprot>
</declaration>
</query>