triangle PDBeMotif: 4c5x  
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coner
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Classification dna    | release date: Mon, Sep 16, 2013
Title ultra high resolution dickerson-drew dodecamer b-dna with 5-hydroxymethyl-cytosine modification
Authors A.H.EL-SAGHEER, C.J.SCHOFIELD, M.MCDONOUGH, T.BROWN
Method X-RAY DIFFRACTION (resolution: 1.30Å)
PDBe Citation   
Small molecules:    search MG MG binding statistics MG
Modified residues:  search 5HC 5HC binding statistics 5HC
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : 5'-D(CP*GP*CP*GP*AP*AP*TP*TP*5HCP*GP*CP*GP)-3'
JMol viewer RasMol script viewer  MG 101A  ..            
sec str:  ..............
sequence :  ..CGCGAATTCGCG
seq num:  ..1           

chain B : 5'-D(CP*GP*CP*GP*AP*AP*TP*TP*5HCP*GP*CP*GP)-3'
JMol viewer RasMol script viewer  MG 101A  ..            
sec str:  ..............
sequence :  ..CGCGAATTCGCG
seq num:  ..13          

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