triangle PDBeMotif: 3j3e  
  coner Sequences coner   coner 3D motifs coner   coner Ligand environment coner   coner Ligand bonds coner
   
coner
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coner
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Classification ribosome    | release date: Wed, Feb 27, 2013
Title structure of the d. melanogaster 60s rrna
Authors A.M.ANGER, D.N.WILSON, J.-P.ARMACHE, M.HABECK, M.SUBKLEWE, O.BERNINGHAUSEN, R.BECKMANN
Method ELECTRON MICROSCOPY (resolution: 6.00Å)
PDBe Citation   
Small molecules:    search U U binding statistics U
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain 5 : 28S RIBOSOMAL RNA
JMol viewer RasMol script viewer  U 25  ..* *                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ..U ..                                                                                                                                                                                                                                                                                                                                                                                                                                                      ..U ..                              ..                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
JMol viewer RasMol script viewer  U 15  ..| |**                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ..U ..                                                                                                                                                                                                                                                                                                                                                                                                                                                      ..U ..                              ..                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
sec str:  ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
sequence :  ..AUAUACAACCUCAACUCAUAUGGGACUACCCCCUGAAUUUAAGCAUAUUAAUUAGGGGAGGAAAAGAAACUAACAAGGAUUUUCUUAGUAGCGGCGAGCGAAAAGAAAACAGUUCAGCACUAAGUCACUUUGUCUAUAUGGCAAAUGUGAGAUGCAGUGUAUGGAGCGUCAAUAUUCUAGUAUGAGAAAUUAACGAUUUAAGUCCUUCUUAAAUGAGGCCAUUUACCCAUAGAGGGUGCCAGGCCCGUAUAACGUUAAUGAUUACUAGAUGAUGUUUCCAAAGAGUCGUGUUGCUUGAUAGUGCAGCACUAAGUGGGUGGUAAACUCCAUCUAAAACUAAAUAUAACCAUGAGACCGAUAGUAAACAAGUACCGUGAGGGAAAGUUGAAAAGAACUCUGAAUAGAGAGUUAAACAGUACGUGAAACUGCUUAGAGGUUAAGCCCGAUGAACCUGAAUAUCCGUUAUGGAAAAUUCAUCAUUAAAAUUGUAAUAUUUAAAUAAUAUUAUGAGAAUAGUGUGCAUUUUUUCCAUAUAAGGACAUUGUAAUCUAUUAGCAUAUACCAAAUUUAUCAUAAAAUAUAACUUAUAGUUUAUUCCAAUUAAAUUGCUUGCAUUUUAACACAGAAUAAAUGUUAUUAAUUUGAUAAAGUGCUGAUAGAUUUAUAUGAUUACAGUGCGUUAAUUUUUCGGAAUUAUAUAAUGGCAUAAUUAUCAUUGAUUUUUGUGUUUAUUAUAUGCACUUGUAUGAUUAACAAUGCGAAAGAUUCAGGAUACCUUCGGGACCCGUCUUGAAACACGGACCAAGGAGUCUAACAUAUGUGCAAGUUAUUGGGAUAUAAACCUAAUAGCGUAAUUAACUUGACUAAUAAUGGGAUUAGUUUUUUAGCUAUUUAUAGCUAAUUAACACAAUCCCGGGGCGUUCUAUAUAGUUAUGUAUAAUGUAUAUUUAUAUUAUUUAUGCCUCUAACUGGAACGUACCUUGAGCAUAUAUGCUGUGACCCGAAAGAUGGUGAACUAUACUUGAUCAGGUUGAAGUCAGGGGAAACCCUGAUGGAAGACCGAAACAGUUCUGACGUGCAAAUCGAUUGUCAGAAUUGAGUAUAGGGGCGAAAGACCAAUCGAACCAUCUAGUAGCUGGUUCCUUCCGAAGUUUCCCUCAGGAUAGCUGGUGCAUUUUAAUAUUAUAUAAAAUAAUCUUAUCUGGUAAAGCGAAUGAUUAGAGGCCUUAGGGUCGAAACGAUCUUAACCUAUUCUCAAACUUUAAAUGGGUAAGAACCUUAACUUUCUUGAUAUGAAGAUCAAGGUUAUGAUAUAAAUGUCCCAGUGGGCCACUUUUGGUAAGCAGAACUGGCGCUGUGGGAUGAACCAAACGUAAUGUUACGUGCCCAAAUUAACAACUCAUGCAGAUACCAUGAAAGGCGUUGGUUGCUUAAAACAGCAGGACGGUGAUCAUGGAAGUCGAAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAGCAACUAGCCCUUAAAAUGGAUGGCGCUUAAGUUGUAUACCUAUACAUUACCGCUAAAGUAGAUGAUUUAUAUUACUUGUGAUAUAAAUUUUGAAACUUUAGUGAGUAGGAAGGUACAAUGGUAUGCGUAGAAGUGUUUGGCGUAAGCCUGCAUGGAGCUGCCAUUGGUACAGAUCUUGGUGGAUAGUAGCAAAUAAUCGAAUGAGAGCCUUGGAGGACUGAAGUGGAGAAGGGUUUCGUGUGAACAGUGGUUGAUCACGAGUUAGUCGGUCCUAAGUUCAAGGCGAAAGCGAAAAUUUUCAAGUAAAACA... ..UAAUUUUGAACGAAAGGGAAUACGGUUCCAAUUCCGUAACCUGUUGAGUAUCCGUUUGUUAUUAAAUAUGGGCCUCGUGCUCAUCCUGGCAACAGGAACGACCAUAAAGAAGCCGUCGAGAGAUAUCGGAAGAGUUUUCUUUUCUGUUUUAUAGCCGUACUACCAUGGAAGUCUUUCGCAGAGAGAUAUGGUAGAUGGGCUAGAAGAGCAUGACAUAUACUGUUGUGUCGAUAUUUUCUCCUCGGACCUUGAAAAUUUAUGGUGGGGACACGCAAACUUCUCAACAGGCCGUACCAAUAUCCGCAGCUGGUCUCCAAGGUGAAGAGUCUCUAGUCGAUAGAAUAAUGUAGGUAAGGGAAGUCGGCAAAUUAGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUGAAGAUUGAGAUAGUCGGCCUUGAUUGGGAAACAAU... ..AUUGUGGAACUUUCUUGCUAAAAUUUUUAA..UUAUUAAUUAUAACGAUUAUCAAUUAACAAUCAAUUCAGAACUGGCACGGACUUGGGGAAUCCGACUGUCUAAUUAAAACAAAGCAUUGUGAUGGCCCUAGCGGGUGUUGACACAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAAGUAAGCGCGGGUCAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCUACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGAAUAAUUAGCGGGGAAAGAAGACCCUUUUGAGCUUGACUCUAAUCUGGCAGUGUAAGGAGACAUAAGAGGUGUAGAAUAAGUGGGAGAUAUUAGACCUCGGUUUGGUAUCGUCAAUGAAAUACCACUACUCUUAUUGUUUCCUUACUUACUUGAUUAAAUGGAACGUGUAUCAUUUCCUAGCCAUUAUACGGAUAUAUUUAUUAUAUCUUAUGGUAUUGGGUUUUGAUGCAAGCUUCUUGAUCAAAGUAUCACGAGUUUGUUAUAUAAUCGCAAACAAAUUCUUUAAUAAAACGAUGCAUUUAUGUAUUUUUGAUUUGAAAAUUUGGUAUAACUCCAAUUACUCAGGUAUGAUCCAAUUCAAGGACAUUGCCAGGUAGGGAGUUUGACUGGGGCGGUACAUCUCUCAAAUAAUAACGGAGGUGUCCCAAGGCCAGCUCAGUGCGGACAGAAACCACACAUAGAGCAAAAGGGCAAAUGCUGACUUGAUCUCGGUGUUCAGUACACACAGGGACAGCAAAAGCUCGGCCUAUCGAUCCUUUUGGUUUAAAGAGUUUUUAACAAGAGGUGUCAGAAAAGUUACCAUAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAAAAUUCACCAAGCGUUGGAUUGUUCACCCAUGCAAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUAAUGACAAAACGUUGUUGCGACAGCAUUCCUGCGUAGUACGAGAGGAACCCGCAGGUACGGACCAAUGGCACAAUACUUGUUCGAGCGAACAGUGGUAUGACGCUACGUCCGUUGGAUUAUGCCUGAACGCCUCUAAGGUCGUAUCCGUGCUGGACUGCAAUGAUAAAUAAGGGGCAAUUUGCAUUGUAUGGCUUCUAAACCAUUUAAAGUUUAUAAUUUACUUUAUAAACGACAAUGGAUGUGAUGCCAAUGUAAUUUGUAACAUAGUAAAUUGGGAGGAUCUUCGAUCACCUGAUGCCGCGCUAGUUACAUAUAAAAGCAUUAUUUAAUACAAUGACAAAGCCUAGAAUCAAUUGUAAACGACUUUUGUAACAGGCAAGGUGUUGUAAGUGGUUGAGCAGCUGCCAUACUGCGAUCCACUGAAGCUUAUCCUUUGCUUGAUGAUUCGA
seq num:  ..3         13        23        33        43        53        63        73        83        93        103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973       983       993       1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363      1373      1383      1393      1403      1413      1423      1433      1443      1453      1463      1473      1483      1493      1503      1513      1523      1533      1543      1553      1563      1573      1583      1593      1603      1613      1623      1633      1643      1653      1663      1673      1683      1693      1703      1713      1723      1733      1743      1753      1763      1773      1783      1793      1803       ... ..1859      1869      1879      1889      1899      1909      1919      1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039      2049      2059      2069      2079      2089      2099      2109      2119      2129      2139      2149      2159      2169      2179      2189      2199      2209      2219      2229      2239      2249      2259      2269      2279      2289    ... ..2386      2396      2406      ..2446      2456      2466      2476      2486      2496      2506      2516      2526      2536      2546      2556      2566      2576      2586      2596      2606      2616      2626      2636      2646      2656      2666      2676      2686      2696      2706      2716      2726      2736      2746      2756      2766      2776      2786      2796      2806      2816      2826      2836      2846      2856      2866      2876      2886      2896      2906      2916      2926      2936      2946      2956      2966      2976      2986      2996      3006      3016      3026      3036      3046      3056      3066      3076      3086      3096      3106      3116      3126      3136      3146      3156      3166      3176      3186      3196      3206      3216      3226      3236      3246      3256      3266      3276      3286      3296      3306      3316      3326      3336      3346      3356      3366      3376      3386      3396      3406      3416      3426      3436      3446      3456      3466      3476      3486      3496      3506      3516      3526      3536      3546      3556      3566      3576      3586      3596      3606      3616      3626      3636      3646      3656      3666      3676      3686      3696      3706      3716      3726      3736      3746      3756      3766      3776      3786      3796      3806      3816      3826      3836      3846      3856      3866      3876      3886      3896      3906      3916      3926      3936      3946      3956      3966 

chain 9 : 2S RIBOSOMAL RNA
JMol viewer RasMol script viewer  U 19  ..*                            
JMol viewer RasMol script viewer  U 25  ..|                       *    
JMol viewer RasMol script viewer  U 15  ..|                       |* **
sec str:  ...............................
sequence :  ..GCUUGGACUACAUAUGGUUGAGGGUUGUA
seq num:  ..2         12        22       

chain 7 : 5S RIBOSOMAL RNA
sec str:  ..........................................................................................................................
sequence :  ..GCCAACGACCAUACCACGCUGAAUACAUCGGUUCUCGUCCGAUCACCGAAAUUAAGCAGCGUCGCGGGCGGUUAGUACUUAGAUGGGGGACCGCUUGGGAACACCGCGUGUUGUUGGCCU
seq num:  ..1         11        21        31        41        51        61        71        81        91        101       111       

chain 8 : 5.8S RIBOSOMAL RNA
JMol viewer RasMol script viewer  U 19  ..                                                                                                                         **
sec str:  .............................................................................................................................
sequence :  ..AACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGCAGUCCAUGCUG
seq num:  ..1         11        21        31        41        51        61        71        81        91        101       111          

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