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Classification signaling protein    | release date: Mon, Apr 2, 2007
Title nmr based structure of the closed conformation of lys48- linked di-ubiquitin using experimental global rotational diffusion tensor from nmr relaxation measurements
Authors D.FUSHMAN, Y.RYABOV
Method SOLUTION NMR
PDBe Citation   
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chains A,B sequence:
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Residue colours:  hydrophilic   hydrophobic   intermediate 
    View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : UBIQUITIN
member of: CATH:search3.10.20.90GENE3D:searchG3DSA_3.10.20.90PANTHER:searchPTHR10666/searchPTHR10666_SF94PFAM:searchPF00240PROSITE PATTERNS:searchPS00299, PROSITE PROFILES:searchPS50053, SMART:searchSM00213SUPERFAMILY:searchSSF54236UniProt:searchP0CG48
sec str:  ...eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee.
sequence :  ..MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
seq num:  ..1         11        21        31        41        51        61          
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..      | ^**      |  || |||||  || | | |  |   |  |  || || ||||||  |       
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..      | | |      |  || |||||  || | | |  |   |  |  || |^***||||  |       
search RasMol script viewer Motif-ligand binding stats  UBIQUITIN_1 ..      | | |      |  || |||************************** |  | ||||  |       
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..      | | |      |  |*********** | | |  |   |  |  |  |  | ||||  |       
search RasMol script viewer Motif-ligand binding stats  betaturn ..      | | |      **************  | | |  |   ****  |  |  ****|****       
search RasMol script viewer Motif-ligand binding stats  nest ..      | ***      |  ||   |       *** |  |         |  |    ***|  |       
search RasMol script viewer Motif-ligand binding stats  niche ..      | |        ****|   |           ****         ****       ****       
search RasMol script viewer Motif-ligand binding stats  stmotif ..      | |            *****                                              
search RasMol script viewer Motif-ligand binding stats  stturn ..      ***                                                               

chain B : UBIQUITIN
member of: CATH:search3.10.20.90GENE3D:searchG3DSA_3.10.20.90PANTHER:searchPTHR10666/searchPTHR10666_SF94PFAM:searchPF00240PROSITE PATTERNS:searchPS00299, PROSITE PROFILES:searchPS50053, SMART:searchSM00213SUPERFAMILY:searchSSF54236UniProt:searchP0CG48
sec str:  ...eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee.
sequence :  ..MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
seq num:  ..1         11        21        31        41        51        61          
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..      | ^**      |  || |||||  || | | |  |   |  |  || || ||||||  |       
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..      | | |      |  || |||||  || | | |  |   |  |  || |^***||||  |       
search RasMol script viewer Motif-ligand binding stats  UBIQUITIN_1 ..      | | |      |  || |||************************** |  | ||||  |       
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..      | | |      |  |*********** | | |  |   |  |  |  |  | ||||  |       
search RasMol script viewer Motif-ligand binding stats  betaturn ..      | | |      **************  | | |  |   ****  |  |  ****|****       
search RasMol script viewer Motif-ligand binding stats  nest ..      | ***      |  ||   |       *** |  |         |  |    ***|  |       
search RasMol script viewer Motif-ligand binding stats  niche ..      | |        ****|   |           ****         ****       ****       
search RasMol script viewer Motif-ligand binding stats  stmotif ..      | |            *****                                              
search RasMol script viewer Motif-ligand binding stats  stturn ..      ***                                                               

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