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Enzyme   1.6.99.1
Classification oxidoreductase (flavoprotein)    | release date: Thu, Aug 25, 1994
Title old yellow enzyme at 2 angstroms resolution: overall structure, ligand binding and comparison with related flavoproteins
Authors K.M.FOX, P.A.KARPLUS
Method X-RAY DIFFRACTION (resolution: 2.00Å)
PDBe Citation   
Small molecules:    search FMN FMN binding statistics FMN
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
MSFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQA
GGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQH
SLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEK
VGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGP
VIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLGWDKK
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : OLD YELLOW ENZYME
member of: CATH:search3.20.20.70GENE3D:searchG3DSA_3.20.20.70PANTHER:searchPTHR22893/searchPTHR22893_SF10PFAM:searchPF00724SUPERFAMILY:searchSSF51395UniProt:searchQ02899
JMol viewer RasMol script viewer  FMN 401A  ..                                  ***                                  *                                         *                                                                            *  *                                                *                                                                                 *                     **                         **                        
sec str:  ................hhh..eee..eee.........................hhhhhhhhh.....eee..eee................hhhhhhhhhhhhhhhh...eeeeeee..hhh..hhhhhh....eee........hhhhhhhhh....eee..hhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhh..............hhhh.hhhhhhhhhhhhhh.hhheeeee..........hhh...hhhhhhhhhhhhhhhhh......eeeee....................hhhhhhh....eeee......hhhhhhhhh...eeee..hhhhh...hhhhhhh........hhh..............hhhhhh......
sequence :  ..SFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLGWDKK
seq num:  ..1         11        21        31        41        51        61        71        81        91        101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391      
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..          |  ||| |    | |   | |      ||||   |    |   |   ^**  |  |         | | | |  |    |   |          | |||         |  |     | |||   |  |    |   |  || |||     |  ||         |   || |||     |  | |   |  ||  ||| | ||||   |                |  |    |  ||| || |  | |                 | ||       |  | | ||| || |    | |              | |        |  |  |    |  |||| |      |||   |   |  |  | |||| | |  | | ||||  
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..          |  ||| |    | |   | |      ||||   |    |   |   | |  |  |         | | | |  |    |   |          | |||         |  |     | |||   ^***    |   |  || |||     ^***|         |   || |||     |  | |   |  ||  |^*** ||||   |                |  |    |  ||| || |  | |                 | ||       |  | | ||^*** |    | |              | |        |  |  |    |  ||^***      |||   |   |  |  | |||| | ^*** | ||||  
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..          |  ||| |    | |   | |      ||||   |    |   |   | |  |  |         | | | |  |    |   |          | |||         |  |     | |||           |   |  || |||     |   |         |   || |||     |  | |   |  ||  | | | ||||   |                |  |    |  ||| || |  | |                 | ||       |  | | ||| || |    | |              | |        |  |  |    |  || |        |||   *******^  | |||| |      | ||||  
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..          |  ||| |    | |   | |      ||||   ^*****   |   | |  |  |         | | ^*****    |   |          | |||         |  |     | |||           |   |  || |||     |   |         |   || |||     |  | |   |  ||  | | | ||^*****                |  |    |  ^***** ^*****                 | ||       |  | | ||| || |    | |              | |        |  |  |    |  || |        |^*****   |  |  | |||| |      | ||||  
search RasMol script viewer Motif-ligand binding stats  AMIDATION ..          |  ||| |    | |   | |      ||||            |   | |  |  |         | |   |  |    |   |          | |||         |  |     | |||           |   |  || |||     |   |         |   || |||     |  | |   |  ||  | | | || |                    |  |    |  ||| |  |  |                   ^***       |  | | ||| || |    | |              | |        |  |  |    |  || |        | |       |  |  | |||| |      | ||||  
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..          |  ||| |    | |   | |      ||||            |   | |  |  |         | |   |  |    |   |          | |||         |  |     | |||           |   |  || |||     |   |         |   || |||     |  | |   |  ||  | | | || |                    |  |    |  ||| |  |  |                   | |        |  | | ||| || |    | |              | |        |  |  |    ***** |        | |       |  |  | |||| |      | ||||  
search RasMol script viewer Motif-ligand binding stats  asxmotif ..          |  ||| |    | |   | |      ||||            |   | |  |  |         | |   |  |    |   |          | |||         |  |     | |||           *****  || |||     |   |         |   || |||     |  | |   |  ||  | | | || |                    |  |    |  ||| |  |  |                   | |        |  | | ||| || |    | |              | |        |  |  |    |  |  |        | |       |  |  | |||| |      | ||||  
search RasMol script viewer Motif-ligand binding stats  asxturn ..          |  ||| |    | |   | |      ||||            |   | |  |  |         | |   |  |    |   |          | |||         |  |     | |||                  || |||     |   |         |   || |||     |  | |   |  ||  *** | || |                    |  |    |  ||| |  |  |                   | |        |  | ***|| || |    | |              | |        |  |  |    |  |  |        | |       |  |  | |||| |      | ||||  
search RasMol script viewer Motif-ligand binding stats  betaturn ..          |  ||| |    | |   | |      ||||            |   | |  |  |         | |   |  |    |   |          ****|         |  |     ****|                  |****|     |   |         |   |****|     |  | |   |  ||  | | | || |                    |  |    |  |****  |  |                   | |        |  | |  |**** |    | |              | |        |  |  |    ****  |        | |       |  |  | |||| |      ****||  
search RasMol script viewer Motif-ligand binding stats  gammaturn ..          |  ||| |    | |   | |      ||||            |   | |  |  |         | |   |  |    |   |            | |         |  |       | |                  |  | |     |   |         |   |  | |     |  | |   |  ||  | | | || |                    |  |    |  | |    |  |                   | |        |  | |  || || |    | |              | |        |  |  |       |  |        | |       |  |  | |||| |        |***  
search RasMol script viewer Motif-ligand binding stats  nest ..          |  ||| |    | |   | |      ****            |   | |  |  |         | |   |  |    |   |            ***         |  |       ***                  |  ***     |   |         |   |  ***     |  | |   |  ||  | | | || |                    |  |    |  | |    |  |                   ***        |  | |  || || |    | |              ***        |  |  |       |  |        ***       |  |  | |*** |        ***   
search RasMol script viewer Motif-ligand binding stats  niche ..          ********    ***   ***       ***            |   | *******         | |   ****    |   |                        ****                            |    |     |   |         |   |    |     |  | |   ********** ******                    ****    ******    ****                              **** **********    | |                         *******       ****                  ****  *** ****              
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..             | |                                     |   |                 | |           |   |                                                        ******     |   |         |   ******     |  | |                                                                                                 |             | |                                                                                         
search RasMol script viewer Motif-ligand binding stats  stmotif ..             | |                                     |   |                 | |           *****                                                                   *****         |   |          |  | |                                                                                                 |             | |                                                                                         
search RasMol script viewer Motif-ligand binding stats  ststaple ..             | |                                     *****                 | |                                                                                                 *****          |  | |                                                                                                 |             | |                                                                                         
search RasMol script viewer Motif-ligand binding stats  stturn ..             ***                                                           ***                                                                                                                |  | |                                                                                                 |             ***                                                                                         
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..                                                                                                                                                                                              *  * *                                                                                                 *                                                                                                         

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