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Enzyme   5.1.2.2
Classification racemase    | release date: Tue, Jul 6, 1993
Title on the role of lysine 166 in the mechanism of mandelate race pseudomonas putida: mechanistic and crystallographic eviden stereospecific alkylation by (r)-alpha-phenylglycidate
Authors D.J.NEIDHART, J.A.LANDRO, J.W.KOZARICH
Method X-RAY DIFFRACTION (resolution: 2.00Å)
PDBe Citation   
Small molecules:    search MG MG binding statistics MG   search APG APG binding statistics APG
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chain A sequence:
EVLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDMAAMIVNEPLAPVS
LEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRA
VKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEEPTLQHDYEGHQRIQSKLNVP
VQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQEISAHLLAATPTAHWLERLDLA
GSVIEPTLTFEGGNAVIPDLPGVGIIWREKEIGKYLV
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : MANDELATE RACEMASE
member of: CATH:search3.20.20.120/search3.30.390.10GENE3D:searchG3DSA_3.20.20.120/searchG3DSA_3.30.390.10PANTHER:searchPTHR13794/searchPTHR13794_SF4PFAM:searchPF01188/searchPF02746/searchPF13378PROSITE PATTERNS:searchPS00908/searchPS00909, SMART:searchSM00922SUPERFAMILY:searchSSF51604/searchSSF54826UniProt:searchP11444
JMol viewer RasMol script viewer  APG 361A  ..                                                 *                                                                                                               * *                            * *                       *                         *                                                 *                   * *                                        
JMol viewer RasMol script viewer  MG 360A  ..                                                 |                                                                                                               | |                            * |                       *                         *                                                 |                   | |                                        
sec str:  ....eeeeeeeeeeee.....eee..eee..eeeeeeeeee...eeeeeeee..hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....hhhhh......eeeeeee...hhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhh...eee.......hhhhhhhhh....eeee......hhhhhhhhhh...eeee..hhhh..hhhhhhhhhhhhhh..eeeee..hhhhhhhhh.....eeeee...hhhh.....eee..eee............hhhhhh...
sequence :  ..EVLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDMAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEEPTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQEISAHLLAATPTAHWLERLDLAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEIGKYLV
seq num:  ..3         13        23        33        43        53        63        73        83        93        103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353    
search RasMol script viewer Motif-ligand binding stats  ASN_GLYCOSYLATION ..                     | ||    |          | |       | ||| | | |       | || |                          |  |    |    || |||     |||              ||   | |  | |||||   | |              | |   |  | |  ||^***           || ||||  | | |  |   |   |  | |    | ||         | ||||         |||   |         |||   | || | |  ||  |  |         || ||| |  |  |        | |  |   || || 
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..                     | ||    |          | |       | ||| | ^**       | || |                          |  |    |    || |||     |||              ||   ^**  | |||||   | |              ^**   |  | |  |||| |           || ||||  | | |  |   |   |  | |    | ||         | ||||         |||   |         |||   | || | |  ||  |  |         || ||| |  |  |        | |  |   || || 
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..                     | ||    |          | |       | ||| |           | || |                          |  |    |    || |||     |||              ||   |    ^***|||   | |                    |  | |  |||| |           || |||^*** | |  |   |   |  | |    | ||         | ||||         |||   |         |||   | || | |  ||  |  |         |^***| |  |  |        | |  |   || || 
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..                     | ||    |          | |       | ||| |           | || |                          |  |    |    || |||     |||              ||   |      | |||   | |                    |  | |  |||| |           || |||   | | |  |   |   |  | |    | ||         | ||||         |||   |         |||   | || | |  ||  |  |         |  | | |  |  |        | |  *******^| 
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..                     | |^*****          | |       | ||| |           | || |                          |  ^*****    || |||     |||              ^*****      | |||   | |                    |  | |  |||| |           || |||   | | |  |   |   |  | |    | ||         | ||||         |^*****         |^***** || | |  ||  |  |         |  | | |  |  |        | |      || || 
search RasMol script viewer Motif-ligand binding stats  MR_MLE_1 ..                     | |                | |       | ||| |           | || |                          **************************|               |   |      | |||   | |                    |  | |  |||| |           || |||   | | |  |   |   |  | |    | ||         | ||||         | |             | |     || | |  ||  |  |         |  | | |  |  |        | |      || || 
search RasMol script viewer Motif-ligand binding stats  MR_MLE_2 ..                     | |                | |       | ||| |           | || |                                       || |||     | |               |   |      | |||   | |                    |  | ***^*************************^** |  |   |   |  | |    | ||         | ||||         | |             | |     || | |  ||  |  |         |  | | |  |  |        | |      || || 
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..                     | |                | |       | ||| |           | || |                                       || |||     | |               |   |      | |||   | |                    |  |    |||| |           *****|       |  |   |   |  | |    | ||         | ||||         | |             | |     || | |  ||  |  |         |  | | |  |  |        | |      ***** 
search RasMol script viewer Motif-ligand binding stats  asxmotif ..                     | |                | |       | ||| |           | || |                                       || |||     | |               |   |      | |||   | |                    |  |    |||| |           || |||       |  *****   |  | |    | ||         | ||||         | |             | |     || | |  ||  |  |         |  | | |  |  |        | |      || || 
search RasMol script viewer Motif-ligand binding stats  asxturn ..                     | |                | |       | ||| |           | || |                                       || |||     | |               |   |      | |||   | |                    |  |    ***| |           || |||       |  |       |  | |    | ||         | ||||         | |             | |     || | |  ||  |  |         |  | | |  |  |        | |      || || 
search RasMol script viewer Motif-ligand binding stats  betaturn ..                     | |                | |       | |****           | || |                                       |****|     | |               |   |      ****|   | |                    |  |     | | |           *****|       ****       |  | |    | ||         ****||         | |             | |     || | |  |****  |         |  | | |  ****        | |      ****| 
search RasMol script viewer Motif-ligand binding stats  gammaturn ..                     | |                | |       *** |             | || |                                       |  | |     | |               |   |        | |   | |                    |  |     | | |              | |                  |  | |    | ||           ||||         | |             | |     || | |  ||  |  |         |  | | |              | |       |  | 
search RasMol script viewer Motif-ligand binding stats  nest ..                     | |                ***         | |             | || |                                       |  ***     ***               |   |        ***   | |                    |  |     *****              ***                  |  | |    ***|           ****         ***             ***     |*** |  ||  |  |         |  | | |              ***       |  | 
search RasMol script viewer Motif-ligand binding stats  niche ..                     | |                            | |             ******                                       |    |                       |   |              | |                    ****                                             ******    ****                        ***                     ||   |  |*******         **** ***                        **** 
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                     | |                            | |                                                          ******                       |   |              | |                                                                                                                                   ||   |  |   |                                                 
search RasMol script viewer Motif-ligand binding stats  ststaple ..                     | |                            | |                                                                                       *****              | |                                                                                                                                   ******  *****                                                 
search RasMol script viewer Motif-ligand binding stats  stturn ..                     ***                            ***                                                                                                          | |                                                                                                                                                                                                 
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..                                                                                                                                                                 * *                                                                                                                                                                                                 

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