triangle PDBeMotif: 1l6g  
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Enzyme   5.1.1.1
Classification isomerase    | release date: Sun, Mar 10, 2002
Title alanine racemase bound with n-(5'-phosphopyridoxyl)-d- alanine
Authors A.WATANABE, B.MIKAMI, H.HAYASHI, H.KAGAMIYAMA, N.ESAKI, T.YOSHIMURA
Method X-RAY DIFFRACTION (resolution: 2.00Å)
PDBe Citation   
Small molecules:    search PDD PDD binding statistics PDD
Modified residues:  search KCX KCX binding statistics KCX
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chains A,B sequence:
MNDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEA
PILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVL
EGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYP
LKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHFHVLVDGQKAPIVGRICMDQCMIRLP
GPLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTISYRVPRIFFRHKRIMEVRNAIGRGESSA
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain A : ALANINE RACEMASE
member of: CATH:search2.40.37.10/search3.20.20.10GENE3D:searchG3DSA_2.40.37.10/searchG3DSA_3.20.20.10HAMAP:searchMF_01201PANTHER:searchPTHR30511PFAM:searchPF00842/searchPF01168PRINTS:searchALARACEMASEPROSITE PATTERNS:searchPS00395, SMART:searchSM01005SUPERFAMILY:searchSSF50621/searchSSF51419TIGRFAMS:searchTIGR00492UniProt:searchP10724
JMol viewer RasMol script viewer  PDD 1390B  ..                                                                                                                                                                                                                                                                       *                  *                          **                                                                       
JMol viewer RasMol script viewer  PDD 390A  ..                                     *   *                                                                                     *      *                             *                                    **              * **                                          |                  |                          ||                                         *                             
sec str:  ........eeeeeehhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhh.....eee....hhhhhhhhhhh.eeeee.hhhhhhhhhhhh.....eeeeee...........hhhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhhhhh.......eee..hhhhhhhhhhhh..eeeehhhhhh......hhhhh.......eeeeee..eeeee....eehhhhhee....eeeeee..hhhhh.hhhhhh.eeee..eeeeee.......eeeee........eeeeeeee..eeehhhhhhhhhh...hhhhhhh.....eeeee..eeeeee.....
sequence :  ..NDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHFHVLVDGQKAPIVGRICMDQCMIRLPGPLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTISYRVPRIFFRHKRIMEVRNAIGR
seq num:  ..2         12        22        32        42        52        62        72        82        92        102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372         
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..      |  |             |  ||  |   || |  | |||  |   |  |          |  || || ||| |        |  |      | |             |  | | |        | |||||   |   ^**       |  |          |  | |             || ||          |   ^**|  |       |||||||     || ||     | |            |  |  |||| | |           || |||                      |  |         | ||   ||   | |  |  || | | |  |  |  |^**|     |  |          
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..      ^***             |  ||  |   || |  | |||  |   ^***          |  || || ||| |        |  |      | |             |  | | |        | |||||   |   |         |  |          ^*** |             || ||          |   |  |  |       |||||||     || ||     | |            |  |  |||| | |           || |||                      |  |         | ||   ||   | |  ^***| | | |  |  |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..                       |  ||  |   || |  | |||  |   |             |  || || ||| |        |  |      | |             |  | | |        | |||||   |   |         |  |          |  | |             || ||          |   |  |  |       |||||||     || ||     | |            |  |  |||| | |           || |||                      |  |         | ||   ||   | |  |   | *******^  |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..                       |  ||  |   || |  | |||  |   |             |  || || ||| |        |  |      | |             |  | | |        | |||||   |   |         |  |          |  | |             || ||          |   |  |  |       |||||||     || ||     | |            |  |  ||^*****           || |||                      |  |         | ^*****|   | |  |   |   | |     |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  ALANINE_RACEMASE ..                       |  ||  |   ***^*******  |   |             |  || || ||| |        |  |      | |             |  | | |        | |||||   |   |         |  |          |  | |             || ||          |   |  |  |       |||||||     || ||     | |            |  |  || | |             || |||                      |  |         |  |   ||   | |  |   |   | |     |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..                       |  ||  |    | |  | |||  |   |             ***** || ||| |        |  |      | |             |  | | |        | |||||   |   |         |  |          |  | |             || ||          |   |  |  |       |||||||     || ||     | |            |  |  || | |             || |||                      |  |         |  |   ||   | |  |   |   | |     |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  asxturn ..                       |  ||  |    | |  | |||  |   |             |  |  || ||| |        |  |      | |             |  | | |        ***||||   |   |         |  |          |  | |             || ||          |   |  |  |       |||||||     || ||     | |            |  |  || | |             || |||                      |  |         |  |   ||   | |  |   |   | |     |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  betabulge ..                       |  ||  |    | |  | |||  |   |             |  |  || ||| |        |  |      | |             |  | | |           ||||   |   |         |  |          |  | |             || ||          |   |  |  |       |||||||     || ||     | |            |  |  || | |             || |||                      |  |         |  |   **   | |  |   |   | |     |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  betaturn ..                       |  |****    | |  ****|  |   |             ****  |****| |        ****      | |             |  | | |           ||||   |   |         |  |          |  | |             ****|          |   |  ****       ******|     ****|     | |            ****  **** |             |****|                      |  |         ****        | |  |   |   | |     |  || ||     ****          
search RasMol script viewer Motif-ligand binding stats  nest ..                       |  ||  |    | |    ***  |   |                   |  *** |                  ***             |  | | |           ****   |   |         |  |          |  | |              |  |          |   |              |  ***      |  |     | |            |  |   | ***             |  ***                      |  |         |  |        | |  |   |   ***     |  || ||                   
search RasMol script viewer Motif-ligand binding stats  niche ..                       ********    ***         |   |                   |    ***                                  **** ***             |    |   |         ****          ******              ****          |   |              |    |      ****     ***            ****   | ***             |    |                      ****         ****        ***  |   |           ********                   
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                                     |         |   |                   ******                                                         |    |   |                                                         |   |              ******                                     |                 ******                      |                             |   |               | |                    
search RasMol script viewer Motif-ligand binding stats  stmotif ..                                     |         |   |                                                                                  |    |   |                                                         |   |                                                         |                                             |                             *****               | |                    
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                     |         *****                                                                                  |    *****                                                         *****                                                         |                                             |                                                 | |                    
search RasMol script viewer Motif-ligand binding stats  stturn ..                                     |                                                                                                |                                                                                                                                |                                             |                                                 ***                    
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..                                     *                                                                                                *                                                                                                                                *                                             *                                                                        

chain B : ALANINE RACEMASE
member of: CATH:search2.40.37.10/search3.20.20.10GENE3D:searchG3DSA_2.40.37.10/searchG3DSA_3.20.20.10HAMAP:searchMF_01201PANTHER:searchPTHR30511PFAM:searchPF00842/searchPF01168PRINTS:searchALARACEMASEPROSITE PATTERNS:searchPS00395, SMART:searchSM01005SUPERFAMILY:searchSSF50621/searchSSF51419TIGRFAMS:searchTIGR00492UniProt:searchP10724
JMol viewer RasMol script viewer  PDD 1390B  ..                                     *   *                                                                                     *      *                             *                                    **              * **                                                                                                                                   *                             
JMol viewer RasMol script viewer  PDD 390A  ..                                     |   |                                                                                     |      |                             |                                    ||              | ||                                          *                  *                          **                                         |                             
sec str:  ........eeeeeehhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhh.....eee....hhhhhhhhhhh.eeeee.hhhhhhhhhhhh.....eeeeee...........hhhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhhh..eeeehhhhhh......hhhhh.......eeeeee..eeeee....eehhhhhee....eeeeee..hhhhh.hhhhh..eeee..eeeeee.......eeeee........eeeeeeee..eeehhhhhhhhhh...hhhhhhh.....eeeee..eeeeee.....
sequence :  ..NDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHFHVLVDGQKAPIVGRICMDQCMIRLPGPLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTISYRVPRIFFRHKRIMEVRNAIGR
seq num:  ..2         12        22        32        42        52        62        72        82        92        102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372         
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..      |  | | |         |  ||  |   || |  | |||  |   |  || |             || ||| |        |  |      | |             |  | | |        | |||||   |   ^**    |  |  |          |  | |             || ||              ^**|  |       |||||||     || ||     | |            |  |  |||| | |            | ||||  |  |   |  |        |  |         | ||   ||  || |  |  || | | |  |  |  |^**|     |  |          
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..      ^*** | |         |  ||  |   || |  | |||  |   ^***| |             || ||| |        |  |      | |             |  | | |        | |||||   |   |      |  |  |          ^*** |             || ||                 |  |       |||||||     || ||     | |            |  |  |||| | |            | ||||  |  |   |  |        |  |         | ||   ||  || |  ^***| | | |  |  |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  TYR_PHOSPHO_SITE ..           | |         |  ||  |   || |  | |||  |   |   | |             || ||| |        |  |      | |             |  | | |        | |||||   |   |      |  |  |          |  | |             || ||                 |  |       |||||||     || ||     | |            |  |  |||| | |            | ||||  |  |   |  |        |  |         | ||   ||  || |  |   | *******^  |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..           | |         |  ||  |   || |  | |||  |   |   | |             || ||| |        |  |      | |             |  | | |        | |||||   |   |      |  |  |          |  | |             || ||                 |  |       |||||||     || ||     | |            |  |  ||^*****            | ||||  |  |   |  |        |  |         | ^*****|  || |  |   |   | |     |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  ALANINE_RACEMASE ..           | |         |  ||  |   ***^*******  |   |   | |             || ||| |        |  |      | |             |  | | |        | |||||   |   |      |  |  |          |  | |             || ||                 |  |       |||||||     || ||     | |            |  |  || | |              | ||||  |  |   |  |        |  |         |  |   ||  || |  |   |   | |     |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  asxturn ..           ***         |  ||  |    | |  | |||  |   |   | |             || ||| |        |  |      | |             |  | | |        ***||||   |   |      |  |  |          |  | |             || ||                 |  |       |||||||     || ||     | |            |  |  || | |              | ||||  |  |   |  |        |  |         |  |   ||  || |  |   |   | |     |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  betabulge ..                       |  ||  |    | |  | |||  |   |   | |             || ||| |        |  |      | |             |  | | |           ||||   |   |      |  |  |          |  | |             || ||                 |  |       |||||||     || ||     | |            |  |  || | |              | ||||  |  |   |  |        |  |         |  |   **  || |  |   |   | |     |  || ||     |  |          
search RasMol script viewer Motif-ligand binding stats  betaturn ..                       |  |****    | |  ****|  |   |   | |             |****| |        ****      | |             |  | | |           ||||   |   |      |  |  |          |  | |             ****|                 ****       ******|     ****|     | |            |  |  **** |              ****|****  |   ****        |  |         ****       ****  |   |   | |     |  || ||     ****          
search RasMol script viewer Motif-ligand binding stats  nest ..                       |  ||  |    | |    ***  |   |   ***             |  *** |                  ***             |  | | |           ****   |   |      |  |  |          |  | |              |  |                             |  ***      |  |     | |            |  |   | ***                ***   |  |               |  |         |  |        | |  |   |   ***     |  || ||                   
search RasMol script viewer Motif-ligand binding stats  niche ..                       ********    ***         |   |                   |    ***                                  **** ***             |    |   |      *******          ******              ****                             |    |      ****     ***            ****   |                          ****               ****         ****        ***  |   |           ********                   
search RasMol script viewer Motif-ligand binding stats  schellmannloop ..                                     |         |   |                   ******                                                         |    |   |                                                                            ******                                     |                                             |                             |   |               | |                    
search RasMol script viewer Motif-ligand binding stats  stmotif ..                                     |         |   |                                                                                  |    |   |                                                                                                                       |                                             |                             *****               | |                    
search RasMol script viewer Motif-ligand binding stats  ststaple ..                                     |         *****                                                                                  |    *****                                                                                                                       |                                             |                                                 | |                    
search RasMol script viewer Motif-ligand binding stats  stturn ..                                     |                                                                                                |                                                                                                                                |                                             |                                                 ***                    
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..                                     *                                                                                                *                                                                                                                                *                                             *                                                                        

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