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Classification hydrolase    | release date: Mon, Jan 14, 2002
Title high resolution crystal structure of a thermostable serine-carboxyl type proteinase, kumamolisin (kscp)
Authors B.M.DUNN, H.OYAMA, K.MASKOS, K.ODA, K.UCHIDA, M.COMELLAS-BIGLER, P.FUENTES-PRIOR, R.HUBER, W.BODE
Method X-RAY DIFFRACTION (resolution: 1.38Å)
PDBe Citation   
Small molecules:    search SO4 SO4 binding statistics SO4   search CA CA binding statistics CA
Ligand bond colours:   *  covalent   *  ionic   *  hydrogen   *  electrostatic   *  van-der-waals   *  plane-atom   *  plane-plane   *  undefined  - Click here to show 5Å bonds
Chains 1,2 sequence:
AAPTAYTPLDVAQAYQFPEGLDGQGQCIAIIELGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVE
LDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLA
AAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSA
NPGAGSGRGVPDVAGNADPATGYEVVIDGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEG
NNDIANRARIYQAGPGWDPCTGLGSPIGIRLLQALLP
Residue colours:  hydrophilic   hydrophobic   intermediate 
Assembly 1     View the assembly/model: ( JMolViewer Download PDB file RasMol script viewer AstexViewer™@MSD-EBI )
Motif search   chain:    Sequence numbers: 
   Using:   φ/ψ    residues code    secondary structures   
 coordinates of:  Cαs Side-chain
 
      View the fragment: rasmol script JMol viewer
chain 1 : KUMAMOLYSIN
member of: CATH:search3.40.50.200GENE3D:searchG3DSA_3.40.50.200PANTHER:searchPTHR14218/searchPTHR14218_SF6PFAM:searchPF00082PROSITE PROFILES:searchPS51695, SUPERFAMILY:searchSSF52743UniProt:searchQ8RR56
JMol viewer RasMol script viewer  SO4 13591  ..                                                                                                                                                                                                     ****                                                                                                                                                            
JMol viewer RasMol script viewer  CA 13581  ..                                                                                                                                                                                                     ||||                                                                                                                  **                * * *                   
sec str:  .....eeehhhhhhhhh...........eeeeee.....hhhhhhhhhhhh......eeeee..............hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhh......eeee...ee.hhhhhhhhhhhhhhhhhhhhh..eeeee.................ee.......eeeeeeeeee....eeeeee..hhhhhh....ee......hhhhh................ee..eeee....eeeeeee..eeeee.hhhhhhhhhhhhhhhhhhhhh.....hhhhhh..hhh.ee.............................eehhhhhhhhhh.
sequence :  ..AAPTAYTPLDVAQAYQFPEGLDGQGQCIAIIELGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVELDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSANPGAGSGRGVPDVAGNADPATGYEVVIDGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCTGLGSPIGIRLLQALLP
seq num:  ..1         11        21        31        41        51        61        71        81        91        101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351    
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..      |  |  | ||||  |||| | |   |              | |||                 | |  | |             | ||   |     |   |      |  | ^**           |  |                 | |       | | | || | |     |  | ||          |  | ||    | |  |    |  | ||  || || | |  | |||| ^**         |  |  |  |  |    | || |              | |       || || |  |      | | |  | |       | ||  |    |   |  | 
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..      ^***  | ||||  |||| | |   |              | |||                 | |  | |             | ||   |     |   |      |  |               |  |                 | |       | | ^*** | |     |  | ||          |  | ||    | |  |    |  | ||  |^*** | |  | ||||   |         |  ^***  |  |    | || |              | |       || || |  |      | | |  | |       | ||  |    |   |  | 
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..            | ||||  ||^*****   |              | |||                 | |  | |             | ^*****     |   |      |  |               |  |                 | |       | ^***** | |     |  | ||          |  | ||    | |  ^*****  | ||  |  |  | |  | ||^*****         |  |     |  |    ^*****              | |       || || |  |      | | |  | |       | ||  ^*****   |  | 
search RasMol script viewer Motif-ligand binding stats  alphabetamotif ..            | ||||  |||| |     |              | |||                 | |  | |             |  |         |   |      |  |               |  |                 | |       |   | |  | |     |  | ||          |  | ||    | |          | ||  |  |  | |  | || |             |  |     |  |      || |              | |       ***** |  |      | | |  | |       | ||  |        |  | 
search RasMol script viewer Motif-ligand binding stats  asxturn ..            | ||||  |*** |     |              | |||                 | |  | |             |  |         |   |      |  |               |  |                 | |       |   | |  | |     |  | ||          |  | ||    ***          | ||  |  |  | |  | || |             |  |     |  |      || |              | |       || || |  |      *****  | |       ***|  |        |  | 
search RasMol script viewer Motif-ligand binding stats  betabulge ..            | ||||  |||| |     |              | |||                 | |  | |             |  |         |   |      |  |               |  |                 | |       |   | |  | |     |  | ||          |  | **                 | ||  |  |  | |  | || |             |  |     |  |      || |              | |       || || |  |      | |    | |          |  |        |  | 
search RasMol script viewer Motif-ligand binding stats  betaturn ..            ****||  ||****     |              ****|                 | **** |             |  |         |   |      |  |               |  |                 | |       |   | |  | |     |  | ||          |  |                    | ||  ****  | |  | ****             ****     ****      ****              | |       ****| |  |      | |    | |          ****        |  | 
search RasMol script viewer Motif-ligand binding stats  nest ..              ***|  |*** |     |                ***                 ***    |             |  |         |   |      |  |               |  |                 ***       |   ***  ***     |  | ||          |  |                    | ||        ***  | || |                                 |                ***        |  | |  |      | |    ***                      |  | 
search RasMol script viewer Motif-ligand binding stats  niche ..                 **** ****     |                                    | |    |             ****         |   |      ****               ****                           |                *******          ****                    ****             ******                                 |                           **** ****      ***                             **** 
search RasMol script viewer Motif-ligand binding stats  stmotif ..                               |                                    | |    |                          *****                                                        |                   | |                                   | |              | |                                    |                                                                               
search RasMol script viewer Motif-ligand binding stats  stturn ..                               |                                    ***    |                                                                                       |                   ***                                   ***              ***                                    |                                                                               
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..                               *                                           *                                                                                       *                                                                                                                 *                                                                               

chain 2 : KUMAMOLYSIN
member of: CATH:search3.40.50.200GENE3D:searchG3DSA_3.40.50.200PANTHER:searchPTHR14218/searchPTHR14218_SF6PFAM:searchPF00082PROSITE PROFILES:searchPS51695, SUPERFAMILY:searchSSF52743UniProt:searchQ8RR56
JMol viewer RasMol script viewer  SO4 13592  ..                                                                                                                                                                                                     ****                                                                                                                                                            
JMol viewer RasMol script viewer  CA 13582  ..                                                                                                                                                                                                     ||||                                                                                                                  **                * * *                   
JMol viewer RasMol script viewer  SO4 13591  ..                                                                                                                                                                                                     ||||                          **                                                                                      ||                | | |                   
sec str:  ......eehhhhhhhhh...........eeeeee.....hhhhhhhhhhhh......eeeee.............hhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhh......eeee...ee.hhhhhhhhhhhhhhhhhhhhh..eeeee....hhhh.........ee.......eeeeeeeeee....eeeeee..hhhhhh....ee......hhhhh................ee..eeee.hhhheeeeee..eeeee.hhhhhhhhhhhhhhhhhhhhh.....hhhhhh..hhh.ee.............................eehhhhhhhhhh.
sequence :  ..AAPTAYTPLDVAQAYQFPEGLDGQGQCIAIIELGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVELDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSANPGAGSGRGVPDVAGNADPATGYEVVIDGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCTGLGSPIGIRLLQALLP
seq num:  ..1         11        21        31        41        51        61        71        81        91        101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351    
search RasMol script viewer Motif-ligand binding stats  PKC_PHOSPHO_SITE ..      |  |  | ||||  |||| | |   |     |   |    | |||                 | |  | |             | ||   |     |   | |   ||  | ^**           |  |                 | |       | | | || | |     |  | ||               ||    | |  |    |  | ||  || || | |  | | || ^**         |  |  |  |  |    | || |              | |        |  | |  |      | | |  | |       | ||  |    |   |  | 
search RasMol script viewer Motif-ligand binding stats  CK2_PHOSPHO_SITE ..      ^***  | ||||  |||| | |   |     |   |    | |||                 | |  | |             | ||   |     |   | |   ||  | |             |  |                 | |       | | ^*** | |     |  | ||               ||    | |  |    |  | ||  |^*** | |  | | ||   |         |  ^***  |  |    | || |              | |        |  | |  |      | | |  | |       | ||  |    |   |  | 
search RasMol script viewer Motif-ligand binding stats  MYRISTYL ..            | ||||  ||^*****   |     |   |    | |||                 | |  | |             | ^*****     |   | |   ||  | |             |  |                 | |       | ^***** | |     |  | ||               ||    | |  ^*****  | ||  |  |  | |  | | ^*****         |  |     |  |    ^*****              | |        |  | |  |      | | |  | |       | ||  ^*****   |  | 
search RasMol script viewer Motif-ligand binding stats  asxmotif ..            | ||||  |||| |     |     *****    | |||                 | |  | |             |  |         |   | |   ||  | |             |  |                 | |       |   | |  | |     |  | ||               ||    | |          | ||  |  |  | |  | |  |             |  |     |  |      || |              | |        |  | |  |      | | |  | |       | ||  |        |  | 
search RasMol script viewer Motif-ligand binding stats  asxturn ..            | ||||  |||| |     |              | |||                 | |  | |             |  |         |   | |   ||  ***             |  |                 | |       |   | |  | |     |  | ||               ||    ***          | ||  |  |  | |  | |  |             |  |     |  |      || |              | |        |  | |  |      *****  | |       ***|  |        |  | 
search RasMol script viewer Motif-ligand binding stats  betabulge ..            | ||||  |||| |     |              | |||                 | |  | |             |  |         |   | |   ||  |               |  |                 | |       |   | |  | |     |  | ||               **                 | ||  |  |  | |  | |  |             |  |     |  |      || |              | |        |  | |  |      | |    | |          |  |        |  | 
search RasMol script viewer Motif-ligand binding stats  betaturn ..            ****||  ||****     |              ****|                 | **** |             ****         |   | |   ||  |               |  |                 | |       |   | |  | |     |  | ||                                  | ||  ****  | |  | ****             ****     ****      ****              | |        |  | |  |      | |    | |          ****        |  | 
search RasMol script viewer Motif-ligand binding stats  nest ..              ***|  |*** |     |                ***                 ***    |             |  |         |   | |   ||  |               |  |                 ***       |   ***  ***     |  | ||                                  | ||        ***  | |                                    |                ***        |  | |  |      | |    ***                      |  | 
search RasMol script viewer Motif-ligand binding stats  niche ..                 **** ****     |                                    | |    |             ****         |   | |   |****               ****                           |                *******                                  ****             ***                                    |                           **** ****      ***                             **** 
search RasMol script viewer Motif-ligand binding stats  stmotif ..                               |                                    | |    |                          ***** |   |                                                  |                   | |                                   | |              | |                                    |                                                                               
search RasMol script viewer Motif-ligand binding stats  ststaple ..                               |                                    | |    |                                *****                                                  |                   | |                                   | |              | |                                    |                                                                               
search RasMol script viewer Motif-ligand binding stats  stturn ..                               |                                    ***    |                                                                                       |                   ***                                   ***              ***                                    |                                                                               
search RasMol script viewer Motif-ligand binding stats  Catalytic site ..                               *                                           *                                                                                       *                                                                                                                 *                                                                               

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