1a85: Sequences

PDBeMotif: 1a85

		Sequences				3D motifs				Ligand environment				Ligand bonds

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Enzyme:	3.4.24.34
Classification:	hydrolase/hydrolase inhibitor \| release date: Fri, Apr 3, 1998
Title:	mmp8 with malonic and asparagine based inhibitor
Authors:	E.G.V.ROEDERN, F.GRAMS, H.BRANDSTETTER, R.A.ENGH
Method:	X-RAY DIFFRACTION (resolution: 2.00Å)

PDBe Citation

Small molecules:

0DY

Ligand bond colours:

covalent

ionic

hydrogen

electrostatic

van-der-waals

plane-atom

plane-plane

undefined

- Click here to show 5Å bonds

Chain A sequence:
NPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILAHAF
QPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG

Residue colours: hydrophilic hydrophobic intermediate

Assembly 1

View the assembly/model: (

)

Motif search

chain:

Sequence numbers:

Using:	φ/ψ residues code secondary structures
	coordinates of: Cαs Side-chain

View the fragment:

chain A : MMP-8 member of: CATH:3.40.390.10, GENE3D:G3DSA_3.40.390.10, PANTHER:PTHR10201/PTHR10201_SF137, PFAM:PF00413, PIRSF:PIRSF001191, PRINTS:MATRIXIN, SMART:SM00235, SUPERFAMILY:SSF55486, UniProt:P22894
`0DY` `1A`	`.. **** * ** * * * ****`
`ZN` `999A`	`.. \|\|\|\| \| \| \| \| \|\|\|\|`
`ZN` `998A`	`.. * * \|\|\|\|* * \| \|\| \| \| \| \|\|\|\|`
`CA` `997A`	`.. \| \| ** \|\|\|\| \| * * \| \|\| \| \| \| \|\|\|\|`
`CA` `996A`	`.. * \| \| \|\| \|\|\|\|\|\| * * * \| \| \| \| \|\| \| \| \| \|\|\|\|`
`sec str:`	`.........eeeeee........hhhhhhhhhhhhhhhhhh...eeee.......eeeeee.................eee..........eeee.............hhhhhhhhhhhhh...........................hhhhhhhh....`
`sequence :`	`..NPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG`
`seq num:`	`..85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235`
`ASN_GLYCOSYLATION`	`.. \| ^*\| \| \|\| \|\| \|\|\| \|\|\| \| \| \| \| \| \|\|\|\| \| \| \|\|\|\|\| \| \|\| ^* \| \| \|\| \|\| \|\| \|\|\| \|\|\| \|\|\|\|\| \| \|\|\|^*** \| \|`
`PKC_PHOSPHO_SITE`	`.. \| \| ^** \| \|\| \|\| \|\|\| \|\|\| \| \| \| \| \| \|\|\|\| \| \| \|\|\|\|\| \| \|\| \| \| \| \| \|\| \|\| \|\| \|\|\| \|\|\| \|\|\|\|\| \| \|\|\| \| \| \|`
`CK2_PHOSPHO_SITE`	`.. \| \| \| \|^*\| \|\|\| \|\|\| \| \| \| ^* \|\|\|^*** \| \|\|\|\|\| \| \|\| \| \| \| \| \|\| \|\| \|\| \|\|\| \|\|\| \|\|\|\|\| \| \|\|\| \| \| \|`
`MYRISTYL`	`.. \| \| \| \| \|\| \|\|\| \|\|\| \| \| \| \|\|\|\| ^***\| \| \|\| \| \| \| \| \|\| \|\| \|\| \|^***\| \|\|\|\|\| \| \|\|\| \| \| \|`
`ZINC_PROTEASE`	`.. \| \| \| \| \|\| \|\|\| \|\|\| \| \| \| \|\|\|\| \|\|\| \| \| \|\| \| \| \| \| *^^^**\|\| \| \| \|\|\|\|\| \| \|\|\| \| \| \|`
`alphabetamotif`	`.. \| \| \| \| \|********* \| \| \| \|\|\|\| \|\|\| \| \| \|\| \| \| \| \| \|\| \| \|\| \|\|\| \| \| \|\|\|\|\| \| \|\|\| \| \| \|`
`asxmotif`	`.. \| \| \| \| \|\| \|\|\| \|\| \| \| \| \|\|\|\| \|\|\| \| \| \|\| \| \| ***\| \| \|\| \|\|\| \| ***\|\| \| \|\|\| \| \| \|`
`asxturn`	`.. \| \| \| \| \|\| \|\|\| \|\| \| \| \| \|* \|\|\| \| \| \| \| \| \| \| \|\| \|\|\| \| **\| \|\| \| \|\|\| \| \| \|`
`betaturn`	`.. \| \| \| \| ******* \| \| \| \|\|\|\| \| \| \| \| \| \| *\| \| \|\| \| \|\|\| \| **`
`nest`	`.. \| \| \| \| \| \| \| ** \|\|\| \| \| \| \| \| \| \| * \| \| \| \|\| \| \|\|\| \|`
`niche`	`.. * ** * * \| \| \| ********* ***`
`schellmannloop`	`.. \| ****** \| \| \|`
`stturn`	`.. \| *** \|`
`Catalytic site`	`.. * *`

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