spacer
  spacer
EBI Groups PANDA Group Publications GOA

PANDA Group Publications

Reference Search

All References
European Nucleotide Archive
Ensembl
GOA
InterPro
Proteome Analysis
UniProt
VectorBase
Other


GOA References


The Gene Ontology Consortium. (2010)
The Gene Ontology in 2010: extensions and refinements.
Nucleic Acids Research 38: D331-D335.
abstract full-text PDF

Barrell D., Dimmer E., Huntley R.P., Binns D., O'Donovan C., Apweiler R. (2009)
The GOA database in 2009--an integrated Gene Ontology Annotation resource.
Nucleic Acids Research 37: D396-D403.
abstract full-text PDF

Dimmer E.C., Huntley R.P., Barrell D.G., Binns D., Draghici S., Camon E.B., Hubank M., Talmud P.J., Apweiler R., Lovering R.C. (2008)
The Gene Ontology - Providing a Functional Role in Proteomic Studies.
Proteomics 2008, 8 Suppl. (Practical Proteomics)
abstract full-text PDF

The Gene Ontology Consortium. (2008)
The Gene Ontology project in 2008.
Nucleic Acids Research 36: D440-D444.
abstract full-text PDF

Camon E., Barrell D., Dimmer E., Lee V. (2006)
The Gene Ontology Annotation (GOA) Database: Sharing Biological Knowledge with GO.
In: In Silico Genomics and Proteomics: Functional Annotation of Genomes and Proteins. Mulder N., and Apweiler R. (eds); pp 37-54, Nova Science Publishers, Inc, New York (2006).
more info

Couto F.M., Silva M.J., Lee V., Dimmer E., Camon, E., Apweiler R., Kirsch H., Rebholz-Schuhmann D. (2006)
GOAnnotator: Linking Protein GO Annotations to Evidence Text.
The Journal of Biomedical Discovery and Collaboration 1: 19.
abstract

Gene Ontology Consortium* (2006)
*Current members of the GO Consortium are: Midori A. Harris, Jennifer I. Clark, Amelia Ireland, Jane Lomax (GO-EBI, Hinxton, UK); Michael Ashburner, Russell Collins (FlyBase, Department of Genetics, University of Cambridge, Cambridge, UK); Karen Eilbeck, Suzanna Lewis, Chris Mungall, John Richter, Gerald M. Rubin, ShengQiang Shu (BDGP, UC-Berkeley, Berkeley, CA, USA), Judith A. Blake, Carol J. Bult, Alexander D. Diehl, Mary E. Dolan, Harold J. Drabkin, Janan T. Eppig, David P. Hill, Li Ni, Martin Ringwald (MGI, The Jackson Laboratory, Bar Harbor, ME, USA); Rama Balakrishnan, Gail Binkley, J. Michael Cherry, Karen R. Christie, Maria C. Costanzo, Qing Dong, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Eurie L. Hong, Christopher Lane, Stuart Miyasato, Robert Nash, Anand Sethuraman, Marek Skrzypek, Chandra L. Theesfeld, Shuai Weng (SGD, Department of Genetics, Stanford University, Stanford, CA, USA); David Botstein, Kara Dolinski, Rose Oughtred (Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA); Tanya Berardini, Suparna Mundodi, Seung Y. Rhee (TAIR, Carnegie Institution, Department of Plant Biology, Stanford, CA, USA); Rolf Apweiler, Daniel Barrell, Evelyn Camon, Emily Dimmer, Nicola Mulder (GOA Database, UniProt, EBI, Hinxton, UK); Rex Chisholm, Petra Fey, Pascale Gaudet, Warren Kibbe, Karen Pilcher (DictyBase, Northwestern University, Chicago, IL, USA); Carol A. Bastiani, Ranjana Kishore, Erich M. Schwarz, Paul Sternberg, Kimberly Van Auken (WormBase, California Institute of Technology, Pasadena, CA, USA); Michelle Gwinn, Linda Hannick, Jennifer Wortman (The Institute for Genome Research, Rockville, MD, USA); Martin Aslett, Matthew Berriman, Valerie Wood (Wellcome Trust Sanger Institute, Hinxton, UK); Susan Bromberg, Cindy Foote, Howard Jacob, Dean Pasko, Victoria Petri, Dorothy Reilly, Kathy Seiler, Mary Shimoyama, Jennifer Smith, Simon Twigger (RGD, Medical College of Wisconsin, Milwaukee, WI, USA); Pankaj Jaiswal (Gramene, Department of Plant Breeding, Cornell University, Ithaca, NY, USA); Trent Seigfried (MaizeGDB, Iowa State University, Ames, IA, USA); Candace Collmer (Wells College, Aurora, NY, USA); Doug Howe, Monte Westerfield (ZFIN, University of Oregon, Eugene, OR, USA).
The Gene Ontology (GO) project in 2006.
Nucleic Acids Research 34: D322-D326 (2006).
abstract full-text HTML full-text PDF

McCarthy F.M. Wang N., Magee G.B., Nanduri B., Lawrence M.L., Camon E.B., Barrell D.G., Hill D.P., Dolan M.E., Williams W.P., Luthe D.S., Bridges S.M., Burgess S.C. (2006)
AgBase: A Functional Genomics Resource for Agriculture.
BMC Genomics 7: 229.
abstract full-text HTML full-text PDF

Camon E., Barrell D., Dimmer E., Lee V., Magrane M., Maslen J., Binns D., Apweiler R. (2005)
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
BMC Bioinformatics 6(1): S17.
abstract full-text HTML full-text PDF

Dolan M.E., Li N., Camon E., Blake J.A. (2005)
A procedure for assessing GO annotation consistency.
Bioinformatics 21: i136-i143.
abstract full-text PDF

Lee V., Camon E., Dimmer E., Barrell D., Apweiler R. (2005)
Who tangos with GOA? Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools.
In Silico Biol. 5: 0002.
full-text HTML

Camon E., Magrane M., Barrell D., Lee V., Dimmer E., Maslen J., Binns D., Harte N., Lopez R., Apweiler R. (2004)
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
Nucleic Acids Research 32(1): D262-D266.
abstract

Gene Ontology Consortium* (2004)
*Current members of the GO Consortium are: M. A. Harris, J. Clark, A. Ireland, J. Lomax (GO-EBI, Hinxton, UK); M. Ashburner, R. Foulger (FlyBase, Department of Genetics, University of Cambridge, Cambridge, UK); K. Eilbeck, S. Lewis, B. Marshall, C. Mungall, J. Richter, G. M. Rubin (BDGP, UC-Berkeley, Berkeley, CA, USA), J. A. Blake, C. Bult, M. Dolan, H. Drabkin, J. T. Eppig, D. P. Hill, L. Ni, M. Ringwald (MGI, Jackson Laboratory, Bar Harbor, ME, USA); R. Balakrishnan, J. M. Cherry, K. R. Christie, M. C. Costanzo, S. S. Dwight, S. Engel, D. G. Fisk, J. E. Hirschman, E. L. Hong, R. S. Nash, A. Sethuraman, C. L. Theesfeld (SGD, Department of Genetics, Stanford University, Stanford, CA, USA); D. Botstein, K. Dolinski, B. Feierbach (Genomics Institute, Princeton University, Princeton, NJ, USA); T. Berardini, S. Mundodi, S. Y. Rhee (TAIR, Carnegie Institution, Department of Plant Biology, Stanford, CA, USA); R. Apweiler, D. Barrell, E. Camon, E. Dimmer, V. Lee (GOA database, UniProt, EBI, Hinxton, UK); R. Chisholm, P. Gaudet, W. Kibbe (DictyBase, Northwestern University, Chicago, IL, USA); R. Kishore, E. M. Schwarz, P. Sternberg (WormBase, California Institute of Technology, Pasadena, CA, USA); M. Gwinn, L. Hannick, J. Wortman (Institute for Genome Research, Rockville, MD, USA); M. Berriman, V. Wood (Wellcome Trust Sanger Institute, Hinxton, UK); N. de la Cruz, P. Tonellato (RGD, Medical College of Wisconsin, Milwaukee, WI, USA); P. Jaiswal (Gramene, Department of Plant Breeding, Cornell University, Ithaca, NY, USA); T. Seigfried (Maize DB, Iowa State University, Ames, IA, USA); R. White (Incyte Genomics, Palo Alto, CA, USA).
The Gene Ontology (GO) database and informatics resource.
Nucleic Acids Research 32: D258-D261.
abstract full-text HTML

Brooksbank C., Camon E., Harris M.A., Magrane M., Martin M., Mulder N., O'Donovan C., Parkinson H., Tuli M., Apweiler R., Birney E., Brazma A., Henrick K., Lopez R., Stoesser G., Stoehr P., and Cameron G. (2003)
The European Bioinformatics Institute's data resources.
Nucleic Acids Research 31: 43-50.
abstract full-text HTML

Camon E., Barrell D., Brooksbank C., Magrane M. and Apweiler R. (2003)
The Gene Ontology Annotation (GOA) Project: Application of GO in SWISS-PROT, TrEMBL and InterPro.
Comparative and Functional Genomomics 4: 71-74.
abstract full-text HTML full-text PDF

Camon E., Barrell D., Lee V., Dimmer E. and Apweiler R. (2003)
The Gene Ontology Annotation Database - An integrated resource of GO annotations to UniProt Knowledgebase.
In Silico Biol. 4: 0002.
abstract full-text HTML

Camon E.*, Magrane M.*, Barrell D., Binns D., Fleischmann W., Kersey P., Mulder N., Oinn T., Maslen J., Cox A. and Apweiler R. (2003)
The Gene Ontology Annotation (GOA) project: implementation of GO in Swiss-Prot, TrEMBL and InterPro.
Genome Research Apr 13(4): 662-672.
abstract full-text HTML full-text PDF

Biswas M., O'Rourke J.F.,Camon E.,Karavidopoulou Y., Kersey P., Kriventseva E., Mittard V., Mulder N., Phan I., and Servant F. (2002)
Applications of InterPro in protein annotation and genome analysis.
Briefings in Bioinformatics 3: 285-295.
abstract full-text PDF

N.B. * denotes equal contribution.



Top


spacer
spacer