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ASTD References

Koscielny G., Le Texier V., Gopalakrishnan C., Kumanduri V., Riethoven J.J., Nardone F., Stanley E., Fallsehr C., Hofmann O., Kull M., Harrington E., Boué S., Eyras E., Plass M., Lopez F., Ritchie W., Moucadel V., Ara T., Pospisil H., Herrmann A., G Reich J., Guigó R., Bork P., Doeberitz M.K., Vilo J., Hide W., Apweiler R., Thanaraj T.A., Gautheret D. (2009)

ASTD: The Alternative Splicing and Transcript Diversity database.

Genomics. 2009 Mar;93(3): 213-220. [Epub 2008 Dec 24]

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Le Texier V., Riethoven J.J., Kumanduri1 V., Gopalakrishnan C., Lopez F., Gautheret D. and Thanaraj T.A. (2006)

AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.

BMC Bioinformatics 7: 169.

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Stamm S., Riethoven J.J., Le Texier V., Gopalakrishnan C., Kumanduri V., Tang Y., Barbosa-Morais N.L., Thanaraj T.A. (2006)

ASD: a bioinformatics resource on alternative splicing.

Nucleic Acids Research 34: D46-D55.

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Thanaraj T. A., Stamm S., Clark F., Riethoven J.J., Le Texier V. and Muilu J. (2004)

ASD: the Alternative Splicing Database.

Nucleic Acids Research 32: D64-D69.

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Thanaraj T.A., Clark F. and Muilu J. (2003)

Conservation of Human Alternative splice Events in Mouse.

Nucleic Acids Research 31(10): 2544-2552.

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Thanaraj T.A. and Stamm S. (2003)

Prediction and statistical analysis of alternatively spliced exons.

Progress in Molecular and Subcellular Biology 31: 1-31.

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Clark F. and Thanaraj T.A. (2002)

Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human.

Human Molecular Genetics 11: 451-464.

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Thanaraj T.A. and Clark F. (2001)

GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions.

Nucleic Acids Research 29: 2581-2593.

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Thanaraj T.A. and Robinson A.J. (2000)

Prediction of Exact Boundaries of Exons.

Briefings in Bioinformatics 1(4): 343-356.

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Thanaraj T.A., Robinson A.J., Muilu J. and Riethoven J.J.M. (2000)

Paradigm Shifts in the Approaches for Gene Annotation.
Editorial article for special issue on our Gene Prediction symposium.

Briefings in Bioinformatics 1(4): 324-329.

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Thanaraj T.A. (2000)

Positional Characterisation of False Positives from Computational Predictions of Human Splice Sites.

Nucleic Acids Research 28(3): 744-754.

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Thanaraj T.A. (1999)

A Clean Data Set of EST-confirmed Splice Sites From Homo Sapiens and Standards for Clean-up Procedures.

Nucleic Acids Research 27(13): 2627-2637.

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¹Reproduced with permission from NAR Online http://www.oup.co.uk/nar/

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