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Gillespie direct algorithm

^ http://www.biomodels.net/kisao/KISAO#KISAO_0000029


Term info

altLabel

SSA, stochastic simulation algorithm, Doob-Gillespie method, DM, Gillespie's direct method

created

2007-11-10

creator

dk

definition

Stochastic simulation algorithm using the reaction probability density function (next-reaction density function), giving the probability that the next reaction will happen in a given time interval. To choose the next reaction to fire, the algorithm directly and separately calculates the identity of the reaction and the time it will fire.

isImplementedIn

iBioSim, BioNetGen, Cain, ByoDyn, BetaWB

seeAlso

http://identifiers.org/doi/10.1016/0021-9991(76)90041-3, http://identifiers.org/doi/10.1021/j100540a008