2013

Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics

Sottoriva, A, Spiteri I, Piccirillo SGM, Touloumis A, Collins VP, Marioni JC, Curtis C, Watts C, and Tavaré S

Proceedings of the National Academy of Sciences. Volume 109, (2013), p.1204 doi: 10.1073/pnas.1115761109

Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data.

Kim, JK, and Marioni JC

Genome Biology. Volume 14, Number 1, (2013), p.R7 doi: doi:10.1186/gb-2013-14-1-r7

Cooperativity and Rapid Evolution of Cobound Transcription Factors in Closely Related Mammals

Stefflova, K, Thybert D, Wilson MD, Streeter I, Aleksic J, Karagianni P, Brazma A, Adams DJ, Talianidis I, Marioni JC, et al.

Cell. Volume 154, (2013), p.530 doi: 10.1016/j.cell.2013.07.007

Peroxiredoxin-3 is overexpressed in prostate cancer and promotes cancer cell survival by protecting cells from oxidative stress

Whitaker, HC, Patel D, Howat WJ, Warren AY, Kay JD, Sangan T, Marioni JC, Mitchell J, Aldridge S, Luxton HJ, et al.

British Journal of Cancer. (2013), doi: 10.1038/bjc.2013.396

bioWeb3D: an online webGL 3D data visualisation tool

Pettit, JB, and Marioni JC

BMC Bioinformatics. Volume 14, (2013), p.185 doi: 10.1186/1471-2105-14-185

Accounting for technical noise in single-cell RNA-seq experiments

Brennecke, P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, et al.

Nature Methods. (2013), p.- doi: 10.1038/nmeth.2645

2012

Extensive compensatory cis-trans regulation in the evolution of mouse gene expression

Goncalves, A, Leigh-Brown S, Thybert D, Stefflova K, Turro E, Flicek P, Brazma A, Odom DT, and Marioni JC

Genome Research. Volume 22, (2012), p.2376 doi: 10.1101/gr.142281.112

Tools for mapping high-throughput sequencing data

Fonseca, NA, Rung J, Brazma A, and Marioni JC

Bioinformatics. Volume 28, (2012), p.3169–3177 doi: 10.1093/bioinformatics/bts605