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SIFTS Statistics FTP
The FTP site
provides access to data from the SIFTS initiative. The public ftp account is maintained by the
European Bioinformatics Institute
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The residue level cross reference data are available in XML format and are located
in the XML directory. This
directory contains file for each PDB entry. |
The data for chain level mapping for all the PDB chains are also available in a tab delimited
ASCII text format and are located
in the "text" directory |
The "text" directory contains a number of flat files exported from the MSD database. All of the
files contain tab separated columns. The contents of each file are as follows: |
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pdb_chain_uniprot.lst |
A summary of the MSD to UniProt residue level mapping, showing the start and end residues of the mapping
using SEQRES, PDB sequence and UniProt numbering. |
| pdb_chain_taxonomy.lst |
A summary of the NCBI tax_id(s),scientific_name(s) and chain type for each PDB chain that has been processed. |
| pdb_pubmed.lst |
A summary of the Pubmed id(s) associated with each PDB entry, together with an ordinal number. |
| pdb_chain_enzyme.lst |
A summary of the EC number(s) (derived via the UniProt mapping) for each PDB chain that has been processed. |
| pdb_chain_go.lst |
A summary of the GO identifier(s) (derived via the UniProt mapping) for each PDB chain that has been processed. |
| pdb_chain_interpro.lst |
A summary of the InterPro identifier(s) (derived via the UniProt mapping) for each PDB chain that has been processed.
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| pdb_chain_pfam.lst |
A summary of the Pfam domain identifier(s)(derived via the UniProt mapping) for each PDB chain that has been processed.
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| pdb_chain_cath_uniprot.lst |
A summary of the CATH identifier(s) and UniProt primary accession number(s) for each PDB chain that has been processed. |
| pdb_chain_scop_uniprot.lst |
A summary of the SCOP identifier(s) and UniProt primary accession number(s) for each PDB chain that has been processed. |
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Primary developers: Sameer Velankar, Harry Boutselakis, Phil McNeil, Dimitris Dimitropoulos, Antonio Suarez (MSD group) and Virginie Mittard, Daniel Barrell, Julius Jacobsen (Sequence database group).
Last modified: Tue March 12 11:02:10 BST 2008
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