The Protein Modelling Discussion Group
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Protein docking Aatu Kaapro Janne Ojanen, PDF
Modelling Protein-Protein Interactions Using 6D Fourier Correlations Parametric Protein Shape Recognition, Expert Antibody Side Chain Placement
RosettaDock
ZDOCK and RDOCK
MOE - Molecular Operating EnvironmentB A L L: A framework for rapid application development in molecular modeling
AutoDock
HADDOCK: a protein-protein docking approach based on biochemical and/or biophysical information
Molecular Modeling of Proteins