PDBeFold (Structure Similarity)

PDBeFold (SSM) is an interactive service for comparing protein structures in 3D.

PDBeFold functionality:

• pairwise comparison and 3D alignment of protein structures
• multiple comparison and 3D alignment of protein structures
• examination of a protein structure for similarity with the whole PDB archive or SCOP archive
• best Ca-alignment of compared structures
• download and visualisation of best-superposed structures using Rasmol (Unix/Linux platforms), Rastop (Windows machines) and Jmol(platform-independent server-side java viewer)
• linking the results to other services - PDBeMotif, SCOP, GeneCensus, FSSP, CATH, PDBSum, UniProt
Launch PDBeFold
PDBeFold: A comparison with other protein matching services.
PDBeFold is used as a structure search engine in PDBePISA.
PDBeFold queries may be launched from any web site (instructions).


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