• ROUND 34
  • CAPRI ROUND 34
    spacer

    CAPRI: Critical Assessment of PRediction of Interactions

    Community wide experiment on the comparative evaluation of protein-protein docking for structure prediction

    Hosted By EMBL/EBI-PDBe Group

    Round 34

    Round 34 ID mapping from group number to Accessor Number for Target 104
    Round 34 UPLOADER ID mapping for Target 104
    Round 34 SCORER ID mapping for Target 104
    Round 34 ID mapping from group number to Accessor Number for Target 105
    Round 34 UPLOADER ID mapping for Target 105
    Round 34 SCORER ID mapping for Target 105


    Full results:

    Target 104

    Results T104 - click here to see the results
    T104 - water summary report
    Clash threshold 45.58
    average 10.56
    std dev 17.51


    PredictorUploaderScorer
    Nr groups 34 11 17
    High Accuracy (***) 53 (11) 174 ( 5) 65 (12 <- 3)
    Medium (**) 151 (24) 331 ( 6) 74 (16 <- 6)
    Acceptable (*) 20 ( 7) 8 ( 2) 0 ( 0 <- 0)
    Incorrect 93 (12) 445 ( 6) 31 ( 5 <- 4)
    Clashes 9 ( 3) 52 ( 3) 0 ( 0 <- 0)
    Low ID 0 ( 0) 0 ( 0) 0 ( 0 <- 0)
    Total 326 (34) 1010 (11) 170 (17 <- 8)


    T104 water

    PredictorUploaderScorer
    Nr groups 34 11 17
    Outstanding (++++) 0 ( 0) 0 ( 0) 0 ( 0 <- 0)
    Excellent (+++) 15 ( 4) 138 (13) 44 ( 9 <- 4)
    Good (++) 60 (14) 360 (20) 61 (15 <- 5)
    Fair (+) 83 (16) 120 (11) 16 ( 7 <- 4)
    Bad 147 (23) 552 (13) 39 ( 6 <- 6)
    Clashes 21 ( 3) 10 ( 1) 10 ( 1 <- 0)
    Total 326 (34) 1180 (28) 170 (17 <- 0)


    Numbers in parentheses refer to the number of different source groups producing these models (ie z scorer groups recognize y out of x uploader groups)

    Target 105

    Results T105 - click here to see the results
    T105 - water summary report
    Clash threshold 41.46
    average 11.00
    std dev 15.23


    PredictorUploaderScorer
    Nr groups 35 10 17
    High Accuracy (***) 42 (12) 105 ( 4) 22 (10 <- 4)
    Medium (**) 186 (29) 392 ( 8) 109 (16 <- 6)
    Acceptable (*) 18 ( 9) 43 ( 4) 18 ( 6 <- 1)
    Incorrect 80 (11) 292 ( 4) 20 ( 4 <- 3)
    Clashes 11 ( 2) 68 ( 4) 0 ( 0 <- 0)
    Low ID 0 ( 0) 0 ( 0) 0 ( 0 <- 0)
    Total 337 (35) 901 (10) 169 (17 <- 8)


    T105 water

    PredictorUploaderScorer
    Nr groups 35 10 17
    Outstanding (++++) 1 ( 1) 17 ( 7) 7 ( 4 <- 4)
    Excellent (+++) 63 (14) 465 (18) 80 (13 <- 5)
    Good (++) 60 (18) 103 (13) 28 ( 9 <- 4)
    Fair (+) 73 (19) 49 ( 9) 21 ( 6 <- 3)
    Bad 130 (16) 425 (10) 23 ( 4 <- 4)
    Clashes 10 ( 1) 10 ( 1) 10 ( 1 <- 0)
    Total 337 (35) 1070 (27) 169 (17 <- 0)


    Numbers in parentheses refer to the number of different source groups producing these models (ie z scorer groups recognize y out of x uploader groups)

    Round 34 will have following targets :

    Target 104-105 : protein-protein complexes

    The targets 104 and 105 for Round 34 are two complexes of DNase domains with immunity proteins,
    offered by Colin Kleanthous Oxford University, UK. The main interest in these complexes is the
    correct modeling of interface sidechains, and water molecules. Both will be assessed in
    addition to the classical docking and scoring assessment.


  • 5th March 2015 - Registration opens for Round 34
  • 16th March 2015 - Round 34 opens - Prediction of targets 104-105 (Both targets represent protein-protein complex)
  • 18th March 2015 - Deadline for server submissions
  • 16th April 2015 - Deadline for submitting predictions
  • 17th April 2015 - Scoring round uploader deadline
  • 21st April 2015 - Scoring round set available
  • 25th April 2015 - Scoring round submission deadline


  • Documentation and Targets Round 34




    SCORERS

    Scorers can download the server set of submissions from
    http://cb.iri.univ-lille1.fr/capri/ using the same login user/pass as distributed for Capri round34. Full details and deadlines are given on this site.


    Email Problems or Queries to Sameer Velankar

    spacer
    spacer