CAPRI: Critical Assessment of PRediction of Interactions

Round 19

Target 41

Due to an error in formatting of P27, hydrogen atoms in these models were not considered as such and therefore included in the determination of clashes. This has now been corrected. Although proper inclusion of these predictions would lower the clash threshold we will keep the previously calculated value of 80. Therefore *only* P27 is affected by this correction.

Some predictions were disqualified on the basis of too many clashes, where in fact these clashes involved hydrogen atoms, that should not be taken into account in the determination of clashes. Due to an error in formatting, these hydrogen atoms were not recognized as such. These predictions have been re-assessed:

On a sidenote, the correction would lower the clash threshold from 80 clashes to 63. However, we will maintain the determined clash threshold of 80 for predictor and scorer-submitted models, so acceptable models with a number of clashes more than 63 but less than 80 are still acceptable:

Target 42

Target 42_AB

Target 42_BC

ROUND 19 Timeline
31st Aug 2009 Round 19 opens - prediction of T41, T42
20th Sep 2009 Deadline for submitting models of T41, T42
24th Sep 2009 Scoring Starts
27th Sep 2009 Deadline for Scoring submissions

Target T41 protein-protein complex (unbound/unbound)
Target T42 protein-protein complex (unbound)

Documentation and Targets Round 19

Entries

SCORERS

Scorers can download the server set of submissions from
http://www.scmbb.ulb.ac.be/capri/ using the same login user/pass as distributed for Capri round19. Full details and deadlines are given on this site.

Email Problems or Queries to Sameer Velankar