CAPRI: Critical Assessment of PRediction of Interactions
Community wide experiment on the comparative evaluation of protein-protein docking for structure prediction
Hosted By EMBL/EBI-MSD Group
Round 17
Round 17 ID mapping from group number to Accessor Number for Target 38 and 39
NOTE The Coordinates are not yet available for download
Target 38
T38 is a complex between centaurin-alpha 1 and the FHA domain (residues 448-545) of KIF13B.
The complex and the coordinates of centaurin-alpha 1 (entry 3FEH, unreleased and confidential) are a gift of Dr. Hee-Won Park (Consortium for Structural Genomics and University of Toronto, Canada).
| Predictor groups | 40 |
| High accuracy (***): | 0 |
| Medium accuracy (**): | 0 |
| Acceptable (*): | 0 |
| Incorrect: | 370 |
| Clashes: | 29 |
| | 399 |
| Clash threshold | 59 |
| average | 19 |
| std dev | 20 |
| Uploader groups | 10 |
| High accuracy (***) | 0 |
| Medium accuracy (**) | 0 |
| Acceptable (*) | 0 |
| Incorrect | 662 |
| Clashes (+) | 337 |
| | 999 |
(+) includes 100 models of T37 - One uploader group submitted 100 models of T37 instead of T38
| Scorer groups | 10 |
| High accuracy (***) | 0 |
| Medium accuracy (**) | 0 |
| Acceptable (*) | 0 |
| Incorrect | 82 |
| Clashes (%) | 18 |
| | 100 |
(%) includes 10 models without source tag - One scorer group forgot to include the md5 source tags
Results for Target 38
Target 39
T39
is the same complex as T38 with "bound" coordinates of the KIF13B FHA domain
taken from the complex (communicated by Dr. Hee-Won Park, unreleased and confidential)
| Predictor groups: | 37 |
| High accuracy (***) | 1 |
| Medium accuracy (**) | 2 |
| Acceptable (*) | 0 |
| Incorrect | 346 |
| Clashes | 17 |
| | 366 |
| Clash threshold | 76 |
| average | 20 |
| std dev | 28 |
| Uploader groups | 14 |
| High accuracy (***) | 0 |
| Medium accuracy (**) | 3 |
| Acceptable (*) | 1 |
| Incorrect | 1257 |
| Clashes | 139 |
| | 1400 |
| Scorer groups | 14 |
| High accuracy (***) | 0 |
| Medium accuracy (**) | 0 |
| Acceptable (*) | 0 |
| Incorrect | 115 |
| Clashes (%) | 15 |
| | 130 |
(%) includes 10 models without source tag- One scorer group forgot to include the md5 source tags
Results for Target 39
ROUND 17 Timeline
Jan 5 Registration opens
Jan 12 Round 17 opens - Prediction of T38, a protein-protein complex (unbound/homology)
Jan 28 Deadline for submitting models of T38
Jan 29 Prediction of T39, the same complex with a bound component
Feb 8 Deadline for submitting models of T39
Feb 12 Scoring starts
Feb 15 Deadline for scoring submissions
Target T38 a protein-protein complex (unbound/homology)
Target T39 the same complex as in T38 with a bound component
Documentation and Targets Round 17
Participants
Management Group
Prediction formats
Open Jan 12th 2009 - go here for downloads
(Target T38 for submissions ) Open Jan 12th 2009 and Closes on 28th Jan 2009
(Target T39 for submisiions) Open Jan 29th 2009 and Closes on 8th Feb 2009
Entries
Current submissions
SCORERS
Scorers can download the server set of submissions from
http://www.scmbb.ulb.ac.be/capri/
using the same login user/pass as distributed for Capri round17. Full details
and deadlines are given on this site.
Email Problems or Queries to Kim Henrick, Sameer Velankar
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