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CAPRI: Critical Assessment of PRediction of Interactions

Community wide experiment on the comparative evaluation of protein-protein docking for structure prediction

Hosted By EMBL/EBI-MSD Group

Round 17

Round 17 ID mapping from group number to Accessor Number for Target 38 and 39
NOTE The Coordinates are not yet available for download

Target 38

T38 is a complex between centaurin-alpha 1 and the FHA domain (residues 448-545) of KIF13B. The complex and the coordinates of centaurin-alpha 1 (entry 3FEH, unreleased and confidential) are a gift of Dr. Hee-Won Park (Consortium for Structural Genomics and University of Toronto, Canada).


Predictor groups 40
High accuracy (***): 0
Medium accuracy (**): 0
Acceptable (*): 0
Incorrect: 370
Clashes: 29
399
Clash threshold 59
average 19
std dev 20


Uploader groups 10
High accuracy (***) 0
Medium accuracy (**) 0
Acceptable (*) 0
Incorrect 662
Clashes (+) 337
999
(+) includes 100 models of T37 - One uploader group submitted 100 models of T37 instead of T38

Scorer groups 10
High accuracy (***) 0
Medium accuracy (**) 0
Acceptable (*) 0
Incorrect 82
Clashes (%) 18
100
(%) includes 10 models without source tag - One scorer group forgot to include the md5 source tags

Results for Target 38

Target 39

T39

is the same complex as T38 with "bound" coordinates of the KIF13B FHA domain taken from the complex (communicated by Dr. Hee-Won Park, unreleased and confidential)


Predictor groups: 37
High accuracy (***) 1
Medium accuracy (**) 2
Acceptable (*) 0
Incorrect 346
Clashes 17
366
Clash threshold 76
average 20
std dev 28

Uploader groups 14
High accuracy (***) 0
Medium accuracy (**) 3
Acceptable (*) 1
Incorrect 1257
Clashes 139
1400

Scorer groups 14
High accuracy (***) 0
Medium accuracy (**) 0
Acceptable (*) 0
Incorrect 115
Clashes (%) 15
130

(%) includes 10 models without source tag- One scorer group forgot to include the md5 source tags

Results for Target 39


ROUND 17 Timeline
Jan 5 Registration opens
Jan 12 Round 17 opens - Prediction of T38, a protein-protein complex (unbound/homology)
Jan 28 Deadline for submitting models of T38
Jan 29 Prediction of T39, the same complex with a bound component
Feb 8 Deadline for submitting models of T39
Feb 12 Scoring starts
Feb 15 Deadline for scoring submissions


Target T38 a protein-protein complex (unbound/homology)
Target T39 the same complex as in T38 with a bound component


Documentation and Targets Round 17

  • Participants
  • Management Group
  • Prediction formats
  • Open Jan 12th 2009 - go here for downloads
  • (Target T38 for submissions ) Open Jan 12th 2009 and Closes on 28th Jan 2009
  • (Target T39 for submisiions) Open Jan 29th 2009 and Closes on 8th Feb 2009

  • Entries

  • Current submissions

  • SCORERS

    Scorers can download the server set of submissions from
    http://www.scmbb.ulb.ac.be/capri/ using the same login user/pass as distributed for Capri round17. Full details and deadlines are given on this site.


    Email Problems or Queries to Kim Henrick, Sameer Velankar

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