Data collection: DBD

General information

Recommended name DBD
Alternative name(s)
  • Transcription Factor Database
Description The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.
Identifier pattern^\d+$
Registry identifierMIR:00000455

Identification schemes

Namespace dbd
URI http://identifiers.org/dbd/
Alternative URI schemes  
  • urn:miriam:dbd

Physical locations (resources)

Resource
MIR:00100590
Description DBD at MRC Laboratory of Molecular Biology
Access URL http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$id+cat:DBD  [Example: 0045310]
Institution MRC Laboratory of Molecular Biology, Cambridge, UK
Website http://www.transcriptionfactor.org/

References