Data collection: EPD

General information

Recommended name EPD
Alternative name(s)
  • Eukaryotic Promoter Database
Description The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.
Identifier pattern^[A-Z-_0-9]+$
Registry identifierMIR:00000408

Identification schemes

Namespace epd
URI http://identifiers.org/epd/
Alternative URI schemes  
  • urn:miriam:epd

Physical locations (resources)

Resource
MIR:00100528
Description EPD at Swiss Institute of Bioinformatics
Access URL http://epd.vital-it.ch/cgi-bin/query_result.pl?out_format=NICE&Entry_0=$id  [Example: TA_H3]
Institution Swiss Institute of Bioinformatics (SIB), Geneva, Switzerland
Website http://epd.vital-it.ch/
Deprecated physical locations   Display/Hide deprecated resources

References