Data collection: Sequence Read Archive

General information

Recommended name Sequence Read Archive
Description The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.
Identifier pattern^[SED]R[APRSXZ]\d{6}
Registry identifierMIR:00000243

Identification schemes

Namespace insdc.sra
URI http://identifiers.org/insdc.sra/
Alternative URI schemes  
  • urn:miriam:insdc.sra

Physical locations (resources)

Resource
MIR:00100313
Description European Nucleotide Archive (ENA)
Access URL http://www.ebi.ac.uk/ena/data/view/$id  [Example: SRX000007]
Institution European Bioinformatics Institute, Hinxton, Cambridge, UK
Website http://www.ebi.ac.uk/ena
Resource
MIR:00100312
Description Sequence Read Archive at NCBI
Access URL http://www.ncbi.nlm.nih.gov/sra/$id?&report=full  [Example: SRX000007]
Institution National Center for Biotechnology Information (NCBI), NIH, Maryland, USA
Website http://www.ncbi.nlm.nih.gov/sra
Resource
MIR:00100314
Description DDBJ Sequence Read Archive (DRA)
Access URL http://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc=$id  [Example: SRX000007]
Institution DNA Data Bank of Japan, Mishima, Shizuoka, Japan
Website http://trace.ddbj.nig.ac.jp/dra/

References