Data collection: Protein Modification Ontology

General information

Recommended name Protein Modification Ontology
Alternative name(s)
  • PSI-MOD
  • MOD
Description The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.
Identifier pattern^MOD:\d{5}
Registry identifierMIR:00000056

Identification schemes

Namespace psimod
URI http://identifiers.org/psimod/
Alternative URI schemes  
  • urn:miriam:psimod
Deprecated URI scheme(s)   Display/Hide deprecated URI scheme(s)

Physical locations (resources)

Resource
MIR:00100084
Description Protein modifications ontology via the Ontology Lookup Service (OLS)
Access URL http://www.ebi.ac.uk/ols/beta/ontologies/mod/terms?obo_id=$id  [Example: MOD:00001]
Institution European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom
Website http://www.ebi.ac.uk/ols/beta/ontologies/mod
Resource
MIR:00100239
Description Protein modifications ontology through BioPortal
Access URL http://bioportal.bioontology.org/ontologies/1041?p=terms&conceptid=$id  [Example: MOD:00001]
Institution National Center for Biomedical Ontology, Stanford, USA
Website http://bioportal.bioontology.org/ontologies/PSIMOD

References