Data collection: Taxonomy

General information

Recommended name Taxonomy
Alternative name(s)
  • NEWT
  • NCBI taxonomy
Description The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.
Identifier pattern^\d+$
Registry identifierMIR:00000006

Identification schemes

Namespace taxonomy
URI http://identifiers.org/taxonomy/
Alternative URI schemes  
  • http://bio2rdf.org/taxonomy
  • urn:miriam:taxonomy
Deprecated URI scheme(s)   Display/Hide deprecated URI scheme(s)

Physical locations (resources)

Resource
MIR:00100019
Description UniProt
Access URL http://www.uniprot.org/taxonomy/$id  [Example: 9606]
Institution UniProt Consortium, USA, UK and Switzerland
Website http://www.uniprot.org/taxonomy/
primary Resource
MIR:00100007
Description NCBI Taxonomy
Access URL http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=$id  [Example: 9606]
Institution National Center for Biotechnology Information, USA
Website http://www.ncbi.nlm.nih.gov/Taxonomy/
Resource
MIR:00100695
Description Bio2RDF
Access URL http://taxonomy.bio2rdf.org/describe/?url=http://bio2rdf.org/taxonomy:$id  [Example: 9606]
Institution Bio2RDF.org
Website http://taxonomy.bio2rdf.org/fct/
Resource
MIR:00100299
Description European Nucleotide Archive (ENA)
Access URL http://www.ebi.ac.uk/ena/data/view/Taxon:$id  [Example: 9606]
Institution European Bioinformatics Institute, Hinxton, Cambridge, UK
Website http://www.ebi.ac.uk/ena/
Resource
MIR:00100507
Description BioPortal
Access URL http://purl.bioontology.org/ontology/NCBITAXON/obo:NCBITaxon_$id  [Example: 9606]
Institution National Center for Biomedical Ontology, Stanford, USA
Website http://bioportal.bioontology.org/ontologies/NCBITAXON

References