EBI Groups Functional Genomics Events EMBO 2010 Agenda

EMBO Practical course 2010 - Agenda

EMBO Practical Course on Analysis and Informatics of Transcriptomics Data

18-23, October 2010
EBI-EMBL, Hinxton, Cambridge, UK


Monday 18th October - [Presentations For Day]
08:30 - 09:00	Registration and breakfast
9:00 - 10:00	Roslin Russell	Lecture: Introduction to R and Bioconductor
10:00 - 11:00	Roslin Russell	Lecture: Data pre-processing
11:00 - 12:30	Roslin Russell, Oscar Rueda	Hands on: First steps in R
12:30 - 13:30	Lunch
13:30 - 14:30	Roslin Russell	Lecture: Experimental design
14:30 - 15:30	Benilton Carvalho, Oscar Rueda	Hands on: Introduction to limma
15:30 - 17:00	Benilton Carvalho	Lecture: Statistics of differential expression
17:00 - 18:30	Benilton Carvalho, Oscar Rueda	Hands on: Introduction to limma
Tuesday 19th October - [Presentations For Day]
9:00 - 12:30	Oscar Rueda	Lecture: linear models
12:30 - 13:30	Lunch
13:30 - 17:00	Oscar Rueda, Benilton Carvalho	Hands on: limma (differential expression)
19:30	Dinner at Jesus College, Cambridge, sponsored by ENFIN
Wednesday 20th October - [Presentations For Day]
9:00 - 10:00	Benilton Carvalho	Lecture: Clustering
10:00 - 12:30	Benilton Carvalho, Oscar Rueda	Hands on: Affymetrix/Illumina
12:30 - 13:30	Lunch
13:30 - 15:30	Hedi Peterson	ENFIN Lecture: Functional analysis of gene lists and networks using g:Profiler, GraphWeb and KEGGanim
15:30 - 18:30	Hedi Peterson	Hands on: Functional analysis of gene lists and networks
Thursday 21nd October - [Presentations For Day]
9:00 - 11:00	Gabriella Rustici	Lecture/hands on: Microarray data quality assessment
11:00 - 12:30	Angela Goncalves	Lecture: RNA-seq data analysis
12:30 - 13:30	Lunch
13:30 - 17:00	Angela Goncalves	Hands on: RNA-seq data analysis
17:00 - 18:30	Poster session I
Friday 22nd October - [Presentations For Day]
9:00 - 12:30	John Quackenbush	Extracting Meaning from Microarray Datasets
12:30 - 13:30	Lunch
13:30 - 17:00	John Quackenbush	MeV practical
17:00 - 18:30	Poster session II
Saturday 23rd October - [Presentations For Day]
9:00 - 16:00	Roslin Russell, Benilton Carvalho, Oscar Rueda	Hands on: Analysis of participants datasets